G90070


Basic Information

Item Value
gene id G90070
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 2003038 ~ 2004606 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU112325
ctgcTAACATTCCAGCCATAAAAagtgatttatattaaaaattaaaaataaacataaaacccCCAAAACATTTCTACATATAGAAATAACATTCATTACTAcgcatatacatacaaaaaccaGCACACATTTCCTGTTATACACAGACTACAATATATCAACAGAAAGCGTGCATTTCTCTACACGGTTTATATCTTCATTTGTCATTTTAGGCACTTGTGGGTGgattttaaatggtatttaaGCAAAACATCCAATGTACTTTCTAATGATTTAGGTATGTGTACAGTCATTTAAAATCAAGCACTAGTGTTTTCTACAGATTATTGACttgcattataaaaatattacgaaatattacaaaaatagtGTTCACTATTtatcacaaaaaacattttaattatttggggAAGTTGTGTCAAGCATACGTTTTGTTTTCAGCAGACTGACCAGGACACTAATGTCCACACTTATAAGATTACAATACAATTGTGTGGCATTTCCTGAAGAGTGTAAATATTGCATCCAACatttattaacaaatatttgACAATTTTGTGGTCATCCCatatagataatatataatatggtcccgataataataataaataatacattccaTAAAATGCCTTGTAAGGATggtagattttaaataaaaataaagatcaaaTCCAATATCAATCAAACAATACTTGATACAGTACAGCCCACAAAcgtaaaacataatacaatgtaattaaggAAAGtggacagaaataaaacatacttaTGAAAAGAACATTTTTCTGTAGGAGATTTCAAACCACACAAAACAGATAGTATATTTGCTGCAACCTACATCAAACCATTTCAAGGCGACGGAGGGCCAAGGTATGATCCAAAAAAGGGCCAGAGCTCGAGAtggatgtattttaaagattttaaacagGCATATGAAACACATTTACTTCCCCAAATACACTCATTAACAAGTAACATTTCccatcaaaatattttattaaataaatgcataaaattaaaacatgatataaaTACTCCCTGAGCACACCACCAAAAACAGAATGTCATACATACAATTGAATGACTGTAAAGAATACTTTCGGATGGTATGCGGAACGTGCAGTAACCGAAAATTACTGCTTTCAATTGAATCAGAAGGCACAGAGTCCCCAACAAATACAACAGGTCTGGATTTagttggcctttttttttttttatatatcaaacGCTGTACTGAATAATTCTCACTGCAACAAAAATACTTACGGGATGTGTATTATCTAGTAGTAAGGATTACGAATGTAGTTTCACATATAGAAATAATGTGGTCCATAAACAAGCAGCCATCTGAATGAAGAGAAAACTCTGAATAATCTGGCTTTTTGTGCATTACCATTTCCTCTAGGTAATAGAGATTGAAAGTCATATTggtatattaaacataaaatggGATgttactatacattttattttattttggaccTTTATAAAGTGTTCAGTGCCAATGGTACTAAAATTACTTGAAATTGATCATTTGGTCAAAACTAATGCACAGGAGCAAAGATACAA
>TU112326
CTGAGCACACCACCAAAAACAGAATGTCATACATACAATTGAATGACTGTAAAGAATACTTTCGGATGGTATGCGGAACGTGCAGTAACCGAAAATTACTGCTTTCAATTGAATCAGAAGGCACAGAGTCCCCAACAAATACAACAGGTCTGGATTTagttggcctttttttttttttatatatcaaacGCTGTACTGAATAATTCTCACTGCAACAAAAATACTTACGGGATGTGTATTATCTAGTAGTAAGGATTACGAATGTAGTTTCACATATAGAAATAATGTGGTCCATAAACAAGCAGCCATCTGAATGAAGAGAAAACTCTGAATAATCTGGCTTTTTGTGCATTACCATTTCCTCTAGGTAATAGAGATTGAAAGTCATATTggtatattaaacataaaatggGATgttactatacattttattttattttggaccTTTATAAAGTGTTCAGTGCCAATGGTACTAAAATTACTTGAAATTGATCATTTGGTCAAAACTAATGCACAGGAGCAAAGATACAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112325 True 1569 lncRNA 0.31 1 2003038 2004606
TU112326 False 531 lncRNA 0.34 1 2004076 2004606

Neighbor

gene id symbol gene type direction distance location
AMCG00017404 htra2,LOC106589831,LOC101079124,LOC105899646,LOC108441752 coding upstream 69587 1923477 ~ 1933451 (+)
AMCG00017411 htra2,LOC106589831,LOC101079124,LOC104960364 coding upstream 73584 1923477 ~ 1929454 (+)
AMCG00017403 NA coding upstream 108576 1876676 ~ 1894462 (+)
AMCG00017402 NA coding upstream 127610 1872627 ~ 1875428 (+)
AMCG00017398 NA coding upstream 234190 1758386 ~ 1768848 (+)
AMCG00017405 NA coding downstream 43071 2047677 ~ 2049406 (+)
AMCG00017412 NA coding downstream 103285 2107891 ~ 2129512 (+)
AMCG00017413 fgfr3 coding downstream 423287 2427893 ~ 2460519 (+)
AMCG00017415 LOC103458261,LOC105909588 coding downstream 568883 2573489 ~ 2598970 (+)
AMCG00017416 NA coding downstream 641668 2646274 ~ 2649483 (+)
G90042 NA non-coding upstream 68254 1929142 ~ 1934784 (+)
G89983 NA non-coding upstream 413233 1580983 ~ 1589805 (+)
G89938 NA non-coding upstream 661743 1340901 ~ 1341295 (+)
G89913 NA non-coding upstream 890879 1111954 ~ 1112159 (+)
G89908 NA non-coding upstream 1031774 970643 ~ 971264 (+)
G90144 NA non-coding downstream 457276 2461882 ~ 2504164 (+)
G90149 NA non-coding downstream 487301 2491907 ~ 2528801 (+)
G90248 NA non-coding downstream 1232839 3237445 ~ 3237726 (+)
G90284 NA non-coding downstream 1893212 3897818 ~ 3898125 (+)
G90333 NA non-coding downstream 2307652 4312258 ~ 4312475 (+)
AMCG00017388 LOC108267694,LOC106608525 other upstream 1791102 207586 ~ 211936 (+)
AMCG00017386 dctn1,LOC101464740 other upstream 1904641 48007 ~ 98397 (+)
AMCG00017422 leprotl1,LOC103152176 other downstream 682814 2687420 ~ 2695453 (+)
AMCG00017445 NA other downstream 2588196 4592802 ~ 4606571 (+)
AMCG00017446 NA other downstream 2658019 4662625 ~ 4688223 (+)
AMCG00017486 NA other downstream 4725132 6729738 ~ 7188643 (+)
G90877 NA other downstream 5663577 7668183 ~ 7671850 (+)

Expression


Co-expression Network