G90144


Basic Information

Item Value
gene id G90144
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 2461882 ~ 2504164 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU112409
cctcacaatttgtttgacttttttgttttgtttacagttgaaagaatgtatacaaattaaaaaaaaatacttttaacaaagTTGGTTCTTTAAATGAATAAGCAATTtatatagaaaaagaaaacttaaaaaaaaagaaaaggaaactgtgTGAGTATTATCCTGGATTGCAGTGAATGGTGAAGTTTTGCAATGTAAAAGCAGTGATTAAATCTCTGAGAACACCAGCCCTCATTGCTCTGTAagcaatgatttgtttttggggggaaagaaaaaggggTTGTGTTTCAATCACTACCAATAGAGTAACGGGAAACATCTTCAAAATTTAGGCTTCGTGCTTTAGAGATTTAATCACTGCCTGATAGTgtttctcttttaaatgaaGGCATGTATTGAGGTTTACTTAAGAACAAGTATTCCAcaatgcaacaaaaacaaactctgaaaaatgcttttgtcaatttttatttataagttcTGTAGTTGTGGCAGAGTTGCCACAGTATCTGGTTTAACAATGCCAATGcacaaaaaacaggaagattGCTTTTACCTTCCAGCTTAGTGTGTTCAATAGGGTGCAACGATTATCtccttatttacttttttttcttttcttggatcCAAGTACTGTACTATCCAGTAGATGTTAAGAAGCAGGGAAAACCAAATGGCTTGTGTAAAAGTAAAACTCTCCAGTTGCTGCTAAAACTAACTGCAATTGTTACCCCAAATGCAGTGATTCAAAACTGACCTGTCCGTCCTCCCCAAATGCGACTTAGTTGGCCCTATTTTGTTCTTGTCTGCAAAGTGCCTCGGACTCATTACCAtggggatgggggaggggggcttttatgaatttaattttaatcccACTTGAATGTAACAGCCATTAATGTCTGCCAAACAAGGAGATGtaggagatgtgtgtgtgtgtgtggggcgggggggtgtcTTTAAATACTtggatttatataaataaactgtaggGCACTTCTCTTGTGTAATCTTGGTCtgctatacaaatatatatatttttgaagaaGGGTAAAAGCTTTCCCTATGGTGAGAGTATTTTTTATTCCTTCAGTTTTCCCTCTTTAGTAACCAGCTGTCACTTCAGAGAATGTGTAGTACAGTCTTTTCTTTTTAGGTAATTTTCTACCCTGCTTGTTTagaaccatttctagggttgaATGTTCCTTTGTCAGTATCGGAACTCTTGCATCCTGCTGATTCACTTTGATTGTGTCATTTGTGGCCGAAGTAGGGGTGCCCaaccctttctttttcttgataCCAGAACGTATAGAGATTTAACACCCCACAAAGGCTGGGGCTGAGGTGGTAGCTCTTCTATTCATTTGTATTGAACAGCTTTACACATTATACATGAATTGTGAAGATGTGCACTGTTGACCTATCAATCCAGTTGTATAAACAAGCAAGAAAATGACtcctttcaaagaaaataaatcatttagtTGAGTCCATCACAGAATATTTTGTGATAATTAATATCTGACAGCTCTTTAAACAGAGGTCCAGTTTAATAGCCTGCATGGCTACCTTTGACCTAAAGAGAGATTTGGGCATCCCTGGATTTAATTAGGCAGTGCTTTATAATCCAGGTGTCAATTTTTGAACCCACTACAAAGTAAAGTGCCAGTCAGTTCACAGTAGCGCAATAAGATAATCAGTTCACCCttgtgtgtgctgttgtttttgttttattatttttatttttgttttaattttccaagTTTGTACACTTAGCAATACTGGGATAACAAcctttttctctgtttattttttgtttgtttttgaaagtattttattaGTGCCATGAAGCTCTtactaaatagaaaaaaaataataatttatagttTGAAGTTACATAAGTGATTGTTGTACATTGAGTAGATTTTATATAgctgtgtgattttttttttttttttgttttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112409 True 1973 lncRNA 0.35 2 2461882 2504164

Neighbor

gene id symbol gene type direction distance location
AMCG00017413 fgfr3 coding upstream 1363 2427893 ~ 2460519 (+)
AMCG00017412 NA coding upstream 332370 2107891 ~ 2129512 (+)
AMCG00017405 NA coding upstream 412476 2047677 ~ 2049406 (+)
AMCG00017404 htra2,LOC106589831,LOC101079124,LOC105899646,LOC108441752 coding upstream 528431 1923477 ~ 1933451 (+)
AMCG00017411 htra2,LOC106589831,LOC101079124,LOC104960364 coding upstream 532428 1923477 ~ 1929454 (+)
AMCG00017415 LOC103458261,LOC105909588 coding downstream 69325 2573489 ~ 2598970 (+)
AMCG00017416 NA coding downstream 142110 2646274 ~ 2649483 (+)
AMCG00017419 NA coding downstream 158522 2662686 ~ 2664553 (+)
AMCG00017424 NA coding downstream 170787 2674951 ~ 2683508 (+)
AMCG00017421 NA coding downstream 191945 2696109 ~ 2708643 (+)
G90070 NA non-coding upstream 457276 2003038 ~ 2004606 (+)
G90042 NA non-coding upstream 527098 1929142 ~ 1934784 (+)
G89983 NA non-coding upstream 872077 1580983 ~ 1589805 (+)
G89938 NA non-coding upstream 1120587 1340901 ~ 1341295 (+)
G89913 NA non-coding upstream 1349723 1111954 ~ 1112159 (+)
G90248 NA non-coding downstream 733281 3237445 ~ 3237726 (+)
G90284 NA non-coding downstream 1393654 3897818 ~ 3898125 (+)
G90333 NA non-coding downstream 1808094 4312258 ~ 4312475 (+)
G90337 NA non-coding downstream 1826206 4330370 ~ 4330583 (+)
G90338 NA non-coding downstream 1881077 4385241 ~ 4390541 (+)
AMCG00017388 LOC108267694,LOC106608525 other upstream 2249946 207586 ~ 211936 (+)
AMCG00017386 dctn1,LOC101464740 other upstream 2363485 48007 ~ 98397 (+)
AMCG00017422 leprotl1,LOC103152176 other downstream 183256 2687420 ~ 2695453 (+)
AMCG00017445 NA other downstream 2088638 4592802 ~ 4606571 (+)
AMCG00017446 NA other downstream 2158461 4662625 ~ 4688223 (+)
AMCG00017486 NA other downstream 4225574 6729738 ~ 7188643 (+)
G90877 NA other downstream 5164019 7668183 ~ 7671850 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location