G90221 (suclg1,LOC107746879)


Basic Information

Item Value
gene id G90221
gene name suclg1,LOC107746879
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 2721426 ~ 2722298 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU112503
CTTCCCTTCTTGTGAATATGACCAGGATTGATGACTCCAGGACAGTTTGGGCCGATGAGACGGGTATGAGTTTGGCGCATGAGTCTGTGTTTCACGCGCACCATGTCCTGCTGGGGGATGCCTTCTGTAATACACACTGCCAGTGGCATTTCAGCATCAATGGCCTCTATGATCGCTGCCCCCGCAAAGGGAGGAGGCACATAGATAACTGTGGCTTCGGCCCCGGTTGTATCCTTAGCctaagaataaacaaatacgCAATATTTTAGTACGA

Function

symbol description
suclg1 Predicted to enable succinate-CoA ligase (ADP-forming) activity and succinate-CoA ligase (GDP-forming) activity. Predicted to be involved in tricarboxylic acid cycle. Predicted to be part of succinate-CoA ligase complex (ADP-forming). Predicted to be active in mitochondrion. Is expressed in several structures, including adaxial cell; alar plate midbrain region; digestive system; musculature system; and solid lens vesicle. Human ortholog(s) of this gene implicated in mitochondrial DNA depletion syndrome 9. Orthologous to human SUCLG1 (succinate-CoA ligase GDP/ADP-forming subunit alpha).

NR:

description
succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112503 True 274 lncRNA 0.50 2 2721426 2722298

Neighbor

gene id symbol gene type direction distance location
AMCG00017417 letm1 coding downstream 155149 2528915 ~ 2566277 (-)
AMCG00017414 NA coding downstream 294299 2076178 ~ 2427127 (-)
AMCG00017406 NA coding downstream 689210 2023432 ~ 2032216 (-)
AMCG00017408 pank2,LOC107391889,LOC107103406,LOC101161204 coding downstream 705864 2005759 ~ 2015562 (-)
AMCG00017407 loxl3,LOC108441751 coding downstream 727885 1985621 ~ 1993541 (-)
AMCG00017425 NA coding upstream 119624 2841922 ~ 3087650 (-)
AMCG00017430 ctnna2 coding upstream 707323 3429621 ~ 3487525 (-)
AMCG00017431 ctnna2,LOC102793143,LOC107706127,LOC103137875 coding upstream 807385 3529683 ~ 3539396 (-)
AMCG00017434 ctnna2,ctnna1,LOC107594905,LOC107750356 coding upstream 1015515 3737813 ~ 3747843 (-)
AMCG00017432 ctnna2,LOC107552348,LOC103137937,LOC107706127 coding upstream 1054196 3776494 ~ 3799472 (-)
G90157 NA non-coding downstream 257167 2373110 ~ 2464259 (-)
G90139 NA non-coding downstream 435897 2285225 ~ 2285529 (-)
G90129 NA non-coding downstream 535687 2185385 ~ 2185739 (-)
G90098 NA non-coding downstream 642182 2079040 ~ 2079244 (-)
G90093 NA non-coding downstream 666063 2054839 ~ 2055363 (-)
G90226 NA non-coding upstream 114221 2836519 ~ 2836798 (-)
G90243 NA non-coding upstream 216952 2939250 ~ 2939477 (-)
G90244 NA non-coding upstream 217637 2939935 ~ 2940143 (-)
G90252 NA non-coding upstream 632767 3355065 ~ 3355489 (-)
G90255 LOC100846954 non-coding upstream 682188 3404486 ~ 3404766 (-)
AMCG00017418 NA other downstream 105864 2601783 ~ 2615562 (-)
AMCG00017384 LOC106911887,LOC104963986 other downstream 2369640 160054 ~ 351786 (-)
G89804 NA other downstream 2615541 105685 ~ 105885 (-)
G90400 NA other upstream 1820477 4542775 ~ 4544760 (-)
G90501 NA other upstream 2436086 5158384 ~ 5221021 (-)
G90502 NA other upstream 2500175 5222473 ~ 5223047 (-)
G90715 fat4,LOC106611628,LOC106604622 other upstream 3664954 6387252 ~ 6389038 (-)
G90746 NA other upstream 4010937 6733235 ~ 7188648 (-)

Expression


Co-expression Network