G90255 (LOC100846954)


Basic Information

Item Value
gene id G90255
gene name LOC100846954
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 3404486 ~ 3404766 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU112539
atcaactcaactcgccgtgtttagaggaggaggaatgaccccaagaacatggaggtggaaacattatgctttgggggtgtttttctgctaaggggacaggacaactgcaccgcatcaaagggacgatggacggggccatgtaccgtcaaatcttgggtgagaacctccttccctcagccagggcattgaaaatgggtcgtggatgggtattccagcatgacaatgacccaaaacacacagccaaggcaacaaaggaatGGC

Function

NR:

description
transposase-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112539 True 261 lncRNA 0.51 2 3404486 3404766

Neighbor

gene id symbol gene type direction distance location
AMCG00017425 NA coding downstream 316836 2841922 ~ 3087650 (-)
AMCG00017417 letm1 coding downstream 838209 2528915 ~ 2566277 (-)
AMCG00017414 NA coding downstream 977359 2076178 ~ 2427127 (-)
AMCG00017406 NA coding downstream 1372270 2023432 ~ 2032216 (-)
AMCG00017408 pank2,LOC107391889,LOC107103406,LOC101161204 coding downstream 1388924 2005759 ~ 2015562 (-)
AMCG00017430 ctnna2 coding upstream 24855 3429621 ~ 3487525 (-)
AMCG00017431 ctnna2,LOC102793143,LOC107706127,LOC103137875 coding upstream 124917 3529683 ~ 3539396 (-)
AMCG00017434 ctnna2,ctnna1,LOC107594905,LOC107750356 coding upstream 333047 3737813 ~ 3747843 (-)
AMCG00017432 ctnna2,LOC107552348,LOC103137937,LOC107706127 coding upstream 371728 3776494 ~ 3799472 (-)
AMCG00017437 NA coding upstream 502686 3907452 ~ 3908488 (-)
G90252 NA non-coding downstream 48997 3355065 ~ 3355489 (-)
G90244 NA non-coding downstream 464343 2939935 ~ 2940143 (-)
G90243 NA non-coding downstream 465009 2939250 ~ 2939477 (-)
G90226 NA non-coding downstream 567688 2836519 ~ 2836798 (-)
G90221 suclg1,LOC107746879 non-coding downstream 682188 2721426 ~ 2722298 (-)
G90281 NA non-coding upstream 267529 3672295 ~ 3685214 (-)
G90287 NA non-coding upstream 550122 3954888 ~ 3955136 (-)
G90289 NA non-coding upstream 636921 4041687 ~ 4041894 (-)
G90307 NA non-coding upstream 797841 4202607 ~ 4202807 (-)
G90354 NA non-coding upstream 942220 4346986 ~ 4347291 (-)
AMCG00017426 NA other downstream 562592 2711302 ~ 2841894 (-)
AMCG00017418 NA other downstream 788924 2601783 ~ 2615562 (-)
AMCG00017384 LOC106911887,LOC104963986 other downstream 3052700 160054 ~ 351786 (-)
G89804 NA other downstream 3298601 105685 ~ 105885 (-)
G90400 NA other upstream 1138009 4542775 ~ 4544760 (-)
G90501 NA other upstream 1753618 5158384 ~ 5221021 (-)
G90502 NA other upstream 1817707 5222473 ~ 5223047 (-)
G90715 fat4,LOC106611628,LOC106604622 other upstream 2982486 6387252 ~ 6389038 (-)
G90746 NA other upstream 3328469 6733235 ~ 7188648 (-)

Expression


Co-expression Network