G90411


Basic Information

Item Value
gene id G90411
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 4662836 ~ 4665167 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU112709
CAGTcaacagatttgaaatgagtgtatattttcaaaaataaattaaattcacaaattaaaacatcaaataatgtgttaataatgtgttttcaatatagtatagggtgaattgaattttcaaatgactctttgtttttttgcattttccatactgtcccaactttttcggaattggggttgtattaCAAGTAAGCACATAAAAGACTAGTCCATGATATAATGCTTTTGTATCATCTGTTCCATTGGCTTTGCTATATTAACTTTACATGTTTCTTATTAAAAGGATGAATTGTACCTTTAATTAACTGAACTGTACCTTTCTAGCTTTCAGTAACTAAGGTAAAGTTTTAAGGTAAAGTACTCACATTAGTTAGGGAGTGCAATGTTTGTACACATGGGAACACTTTTAACTAACATCTTCCTCACAAAcactctcagtctctctctttctcgggAGATTTCTCTGTGGGAAATGATTTCATGTAGCATGCCATGAAGTAATAGCTTGCTGGTATGCAGTGCCAAAGCTGAAAACCCTTTCTGCCACtgtgttacaaaaaaataagacgAAAAAACACAGGCCCCAACCATTTCTTCAAGGTCACACGTCACTTGGCTTTCACAGTTTGTGCTTCGCTAGAAAATAAGTGAACGCTGAAAGGCTGAGCCATGAAAGGAAAACGCCAGCTGTTCACAACAGACATGTCTTATACAGCAAGAAGGAAATTGGATTGATTAAGGTGCAGGACTTTGCTTTTGGAATTACGACTAAGATTTTGGATAGTGGACATTGTATGAttgctgtttgtcttgtttgcattattattagttatcTGTAGGATAGGGACCTGTTTcctgtgtttagtttaggcttgagagtctgtatttttgtttgagaACGGcacactatataaaataaacctcaCTTTGATACATAACCCAGACTCTCTGTTTTCTGAGATCCCCAGTACTGGGTCCAACCCACCACAGTACTATCAACAGTCAGGACTTTTGTGGGAGCATTTACCCTTGAGTCCAGGTTGAAGGCTGTCTTCTTTAAGTCCTGTAGCGCCCTCTGCATGAATTCAAATGCATGGCAGTCAACACAGGGACGACCTGGAGCAAAGAAAGACAGTTGGGTCTGCTTCAGTGATCTTACTATCTGTTATCCAGGCTTACAACTCCCACTTGTCAGTTACTCTGCACACTAACCCCAACAATGATCTTAAATATATGGAGGCAAAATAACAAACTGCACAGCTGatttaatgcacatttcttccagctgaaacaaataaagaaaaatatatatataaatcctcCTGTTAAGGATGtctaaagcacacacacacactggtggccaataatgtaacaataatacctaataaaaacaaatatagacaTTTTGGTACCCTGCACAATTATACAATCAGTGTGTTATCAGTCACTTCCTTTGTTGACAATTTCCTCCATCAAATCATTATATGTTGAATGGTGCACCTGTGATTACAAGCATGCGCCTCTCCCTAAACAATATACAGCGTAAATACACGGCCATACACCATATACTCTTAATTCCCAACTTGCATACCCACTGACTTGTTGCTTTTAAGAATAGATCATAAAAACTACGTGCATCTATTTTAccatatgcaaaatacatacgagtacattataataaatacaaggcAATTAATAATGTCTCCTTAGCAACACGTATTGTTTCGTGCTTCTCCAAACCGTACTGCGATCTTGAATAATGGAGGCGGTGAACGGCCAATATTGCagcttacatacatacatacatacatacatacacgaCAGAATAATGCAATTTCATTCTTTATGACGAATGCATTGTTACGAGTGACAGTGAGACGGTGACAGCAGCGCCGCGACTCACTTTCCGCGGGGATGGCGGTGCCGCTGTCCGGGCTGGCGTCCCCCGGCCGGGCGCACAGcagccccagcagcagcagcagcagcgcggACACGGCGCTCACGGCCTGCGGGCGCACAGCGGGCATCGCGCCGCCTGGATGCGCTGCAATGTGACGGAAACGGGGATGATAATCCTACTTACCTTCACGTAGCGCAAAgcggaataaaacaaaatgaacaaccAGCGATGTAGCCTATCCAACGACCCGGGTATTTTAAAGCCTCATTGTGTAAAATGATTTACAGGATTATAGTTAATATTGCACTAAACAgtacaatgcaaatatttagCTAGCATGCTACACTATCACAAATCTTGAGCCCAAGATATTTCCCATGTTTCATACATCCATGATATGATGCTATCCGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112709 True 2312 lncRNA 0.40 2 4662836 4665167

Neighbor

gene id symbol gene type direction distance location
AMCG00017448 nelfa,LOC100380775 coding downstream 1678 4643696 ~ 4661158 (-)
AMCG00017447 LOC106608414,LOC107396729 coding downstream 42768 4601504 ~ 4620068 (-)
AMCG00017443 LOC107700321,LOC107757625,LOC107695387,LOC107595047,LOC107714648 coding downstream 77879 4558905 ~ 4584957 (-)
AMCG00017441 NA coding downstream 111954 4537971 ~ 4550882 (-)
AMCG00017440 LOC107734701 coding downstream 150627 4510419 ~ 4512209 (-)
AMCG00017453 NA coding upstream 26966 4692133 ~ 4861977 (-)
AMCG00017452 NA coding upstream 211344 4876511 ~ 4884349 (-)
AMCG00017455 mxd4,LOC107757594,LOC107700283 coding upstream 241647 4906814 ~ 4914079 (-)
AMCG00017460 NA coding upstream 305241 4970408 ~ 5010102 (-)
AMCG00017458 NA coding upstream 387125 5052292 ~ 5067312 (-)
G90345 NA non-coding downstream 272346 4384583 ~ 4390490 (-)
G90355 NA non-coding downstream 314524 4348094 ~ 4348312 (-)
G90354 NA non-coding downstream 315545 4346986 ~ 4347291 (-)
G90307 NA non-coding downstream 460029 4202607 ~ 4202807 (-)
G90289 NA non-coding downstream 620942 4041687 ~ 4041894 (-)
G90443 NA non-coding upstream 264219 4929386 ~ 4937166 (-)
G90520 NA non-coding upstream 590922 5256089 ~ 5256406 (-)
G90540 NA non-coding upstream 690095 5355262 ~ 5356316 (-)
G90648 NA non-coding upstream 1011732 5676899 ~ 5677249 (-)
G90670 NA non-coding upstream 1114713 5779880 ~ 5780526 (-)
G90400 NA other downstream 118076 4542775 ~ 4544760 (-)
AMCG00017426 NA other downstream 1820942 2711302 ~ 2841894 (-)
AMCG00017418 NA other downstream 2047274 2601783 ~ 2615562 (-)
AMCG00017384 LOC106911887,LOC104963986 other downstream 4311050 160054 ~ 351786 (-)
G89804 NA other downstream 4556951 105685 ~ 105885 (-)
G90501 NA other upstream 493217 5158384 ~ 5221021 (-)
G90502 NA other upstream 557306 5222473 ~ 5223047 (-)
G90715 fat4,LOC106611628,LOC106604622 other upstream 1722085 6387252 ~ 6389038 (-)
G90746 NA other upstream 2068068 6733235 ~ 7188648 (-)
G90749 NA other upstream 2447269 7112436 ~ 7113181 (-)

Expression


Co-expression Network