G90413


Basic Information

Item Value
gene id G90413
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 4697938 ~ 4710074 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU112713
AGGTGAGAGAAagagatgctTCTCTAGCAGAAGAATGTAAGGGTATCATCAGTGTCTGTCTATGAGTGTCTCacggtgttttttttcttttatgcatttaattctgtgcataaatatgcatatgtaCTGGGCGTGTATAtctatgtacatgtatatgatTGATTGATGATTTTGAAGTAACATTGCCAAAGGTTTCGGTATTTTGCTTTGGATGGTTTTAGTCATATCTAGCTTGCACATCAGTGTATGCTTTAGATttgctatgtgtgtgtgtatgtgtatatatttatgtatatatagtcaTTCTTTGCATTTCAGGCGCCTTTGCCATCTAATCTagcaataaaatgaataatgacatAAAGAAACACATTCTTGGTTCTAATGTCACTGCTACAAGGATAACAATTGCTTTTCCACTTAAAAGGTAACCCTGTATAATATCCGTGATCGGTGTGGTTGATGAGGGGCAGCAGCACCAACAGCCCCACTGAGTTTTGAAGAAAGAAGTTTgctttttgcattatttttaagaagAGATGTGTCTTTTTGactgtgaatttaaattatacaatataaaatgtattactgcaTGGTTAAAATCAATACTAAcatctaaataacatttaaataaagtgttgtAGTGTTATTAGCACTAAATGTCATTTCTAAAAGTCTGAACAGCTAACCTACATCTATAATGGGTATTCCTCAGGCTCTCGTTATTGGAACCAGCAGACAGAATTCTCTAAACTGATTAGAGCTTTTATGTACAAATTTGCTGTTTATAGTGGTATTGCCACAGAGTGCTAAAATATGATATTAATTTTGATACAAGCACGCTGTAAAACATGCAGATTCAGACTTAAAACTCtatcatgtttctttttttcttttgtttaaatgtaacaaatgtaaagtgtaaattgtattgtactgtaaataGCACGCGGAATATTTGATGATCTTTTTGTAACAGACcctgtagagagagaggagaaacaaTATCTAAAGAAGTTTACAAACACATTCACTtatcaaaagacaaaacaaaacaaaaccattcatatttaacaacTTCCCCAAAACTTTTAGAAATGACATTAGCCTCTTAACGCTATGCATGCACCATGGGCATGCAAGTCACACTTCTTAAAGCTCTGTTGGTTCTTGCCTAGTGATACGCAAAACCAGACAATATCCTGCTTTTGTTACTGTAGCTCAGAATCCCATTCTCCTGTAGTATTTGTACACTGGACGCTCCTTGCTATAAACTCCTAGAGTGTATGTGTTCAGGAGGAAATTAACTCATGCAAAGTACAGAGGTAGTGCGATTTGTATCCACTTCAGGAAGCTGCCTGATGGCCACAGCGACTGGGAGAATCGCCAGGGCATACGATGGCCTTGTGTGTTTGCTGAGATGGCTTGGTTTTTTGGGGTTATTTTGGTTCCGTTTTTCTTTAacaattgttttagtttttttaattattattctttattttattttaattttttttataaaagggATCATTGTAAAGATGTAAAGATGATTTCTTGCACTATGAAAGCAATGgatgtaaataatgtatcaataaaaatgaaagctcGTATATATGTGGTAACCAGGTGCTTTCTTTGAACCCAGGAGGAATTCACTCTTTTCAGAGATCTTGCAGCTAAAGGTATAAGCTAAAGCAATATACAAAAAGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112713 True 1712 lncRNA 0.35 2 4697938 4710074

Neighbor

gene id symbol gene type direction distance location
AMCG00017450 NA coding upstream 5983 4689878 ~ 4691955 (+)
AMCG00017449 NA coding upstream 64328 4628215 ~ 4633610 (+)
AMCG00017439 rnf24,LOC107689472 coding upstream 313191 4383332 ~ 4384747 (+)
AMCG00017429 NA coding upstream 498484 4189248 ~ 4199454 (+)
AMCG00017428 lrrtm1,LOC107706126,LOC107551676,LOC107689474,LOC107558618,LOC107711523 coding upstream 1129218 3567260 ~ 3568720 (+)
AMCG00017451 NA coding downstream 151300 4861374 ~ 4868470 (+)
AMCG00017454 NA coding downstream 174887 4884961 ~ 4900663 (+)
AMCG00017457 NA coding downstream 299107 5009181 ~ 5048242 (+)
AMCG00017456 NA coding downstream 522394 5232468 ~ 5272687 (+)
AMCG00017464 NA coding downstream 620682 5330756 ~ 5351825 (+)
G90338 NA non-coding upstream 307397 4385241 ~ 4390541 (+)
G90337 NA non-coding upstream 367355 4330370 ~ 4330583 (+)
G90333 NA non-coding upstream 385463 4312258 ~ 4312475 (+)
G90284 NA non-coding upstream 799813 3897818 ~ 3898125 (+)
G90248 NA non-coding upstream 1460212 3237445 ~ 3237726 (+)
G90436 NA non-coding downstream 190948 4901022 ~ 4910792 (+)
G90475 LOC104962440 non-coding downstream 378519 5088593 ~ 5098887 (+)
G90477 NA non-coding downstream 381594 5091668 ~ 5222752 (+)
G90551 NA non-coding downstream 695368 5405442 ~ 5407529 (+)
G90552 NA non-coding downstream 697574 5407648 ~ 5412689 (+)
AMCG00017446 NA other upstream 9715 4662625 ~ 4688223 (+)
AMCG00017445 NA other upstream 91367 4592802 ~ 4606571 (+)
AMCG00017422 leprotl1,LOC103152176 other upstream 2002485 2687420 ~ 2695453 (+)
AMCG00017388 LOC108267694,LOC106608525 other upstream 4486002 207586 ~ 211936 (+)
AMCG00017386 dctn1,LOC101464740 other upstream 4599541 48007 ~ 98397 (+)
AMCG00017486 NA other downstream 2019664 6729738 ~ 7188643 (+)
G90877 NA other downstream 2958109 7668183 ~ 7671850 (+)
G90881 NA other downstream 2982511 7692585 ~ 7693347 (+)
AMCG00017508 NA other downstream 3096304 7806378 ~ 7813639 (+)
G90955 NA other downstream 3422294 8132368 ~ 8132854 (+)

Expression


Co-expression Network