G90477


Basic Information

Item Value
gene id G90477
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5091668 ~ 5222752 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU112788
TGTTATtgaagctcagtgtgtgtgcagtggagCTCCTCACAGGCTGTGTCCCATTTCACTGCCTTCACCCTCAGCACCTGCAGTAGGTCTCAGCTGCAGCAGTGCAGTCTCTGTGCAGTTCAGCTGAGAGGTTTTTGTACGGCTGTGTAGCACTGTGttgacacatacacactgttAGGATAGTGGAAACTCTGACAGTAGTAATCGCCTGTATCTTCAGGCTGGACTCCACTGATGGTCAGAGTGAAGTCAGTCCCAGATCCACTGCCACTGAATCGCTCTGGTATCCCAGACTGACGTTTAGTGACAAGATAGATCAGGAGTTTAGGAGCTTCTCCAGGTTTCTGTTGGTACCAGGCTAGCCTCTGTCCATTAGAAtcactgtacactgcactgctgaCTTTACAGTTCACAGTGATGATCTCTCCTCGGTGAACAGATTTCAATGATGGAGTCTGAGTCACAGTATATTGTCCACTGGattctgaaatggaaaaactaaaataaatgaat
>TU112790
TGTTATtgaagctcagtgtgtgtgcagtggagCTCCTCACAGGCTGTGTCCCATTTCACTGCCTTCACCCTCAGCACCTGCAGTAGGTCTCAGCTGCAGCAGTGCAGTCTCTGTGCAGTTCAGCTGAGAGGTTTTTGTACGGCTGTGTAGCACTGTGttgacacatacacactgttAGGATAGTGGAAACTCTGACAGTAGTAATCGCCTGTATCTTCAGGCTGGACTCCACTGATGGTCAGAGTGAAGTCAGTCCCAGATCCACTGCCACTGAATCGCTCTGGTATCCCAGACTGACGTTTAGTGACAAGATAGATCAGGAGTTTAGGAGCTTCTCCAGGTTTCTGTTGGTACCAGGCTAGCCACTGTCCATTAGAATCACTGTACACTGGACTGCTGACTTTACAGTTCACAGTGACTGTCTCTCCTCGGTTAACAGATTTCACTGATGGAGTCCGAGTCAAAG
>TU112794
gtttTTGAAGCTCAGTGTGTATTTTCAGTGAAGCTCCACAGGCCCATGTTATTGTCTTCACCCTCCACACCTGCAGTCTCTGTGCAGTTCAGCTGAGGGAGGTTTTTGTACGGCTGTGTAGCACTGTgttaacacatacacactgttaGGATAGTGTAAACTCTGACAGTAGTAATCTCCTGTATCTTCAGGCTGGACTCCACTGATGGTCAGGGTGAAGTCAGTCCCAGATCCACTGCCACTGAATCGCTCTGGGATCCCAGACTGACGGGTAGTGGCAGCATAGATCAGGAGTTTAGGAGCTTCTCCAGGTTTCTGTTGGTACCAGTTTAGCCACTGTCCATTAGAATCACTGTACACTGGACTGCTGACTTTACAGTTCACAGTGACTGTCTCTCCTCGGTTAACAGATTTCACTGATGGAGTCCGAGTCAAAG

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production

RNA

RNA id representative length rna type GC content exon number start site end site
TU112788 True 513 lncRNA 0.47 2 5091668 5138775
TU112790 False 466 lncRNA 0.49 3 5091668 5222752
TU112794 False 437 lncRNA 0.48 2 5128787 5222752

Neighbor

gene id symbol gene type direction distance location
AMCG00017457 NA coding upstream 43426 5009181 ~ 5048242 (+)
AMCG00017454 NA coding upstream 191005 4884961 ~ 4900663 (+)
AMCG00017451 NA coding upstream 223198 4861374 ~ 4868470 (+)
AMCG00017450 NA coding upstream 399713 4689878 ~ 4691955 (+)
AMCG00017449 NA coding upstream 458058 4628215 ~ 4633610 (+)
AMCG00017456 NA coding downstream 9716 5232468 ~ 5272687 (+)
AMCG00017464 NA coding downstream 108004 5330756 ~ 5351825 (+)
AMCG00017463 NA coding downstream 133010 5355762 ~ 5370642 (+)
AMCG00017462 NA coding downstream 150605 5373357 ~ 5375454 (+)
AMCG00017465 NA coding downstream 155707 5378459 ~ 5379148 (+)
G90436 NA non-coding upstream 180876 4901022 ~ 4910792 (+)
G90413 NA non-coding upstream 381594 4697938 ~ 4710074 (+)
G90338 NA non-coding upstream 701127 4385241 ~ 4390541 (+)
G90337 NA non-coding upstream 761085 4330370 ~ 4330583 (+)
G90333 NA non-coding upstream 779193 4312258 ~ 4312475 (+)
G90551 NA non-coding downstream 182690 5405442 ~ 5407529 (+)
G90552 NA non-coding downstream 184896 5407648 ~ 5412689 (+)
G90554 NA non-coding downstream 188979 5411731 ~ 5412261 (+)
G90561 NA non-coding downstream 217460 5440212 ~ 5463064 (+)
G90647 NA non-coding downstream 454149 5676901 ~ 5677244 (+)
AMCG00017446 NA other upstream 403445 4662625 ~ 4688223 (+)
AMCG00017445 NA other upstream 485097 4592802 ~ 4606571 (+)
AMCG00017422 leprotl1,LOC103152176 other upstream 2396215 2687420 ~ 2695453 (+)
AMCG00017388 LOC108267694,LOC106608525 other upstream 4879732 207586 ~ 211936 (+)
AMCG00017386 dctn1,LOC101464740 other upstream 4993271 48007 ~ 98397 (+)
AMCG00017486 NA other downstream 1506986 6729738 ~ 7188643 (+)
G90877 NA other downstream 2445431 7668183 ~ 7671850 (+)
G90881 NA other downstream 2469833 7692585 ~ 7693347 (+)
AMCG00017508 NA other downstream 2583626 7806378 ~ 7813639 (+)
G90955 NA other downstream 2909616 8132368 ~ 8132854 (+)

Expression


Co-expression Network