G90552


Basic Information

Item Value
gene id G90552
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5407648 ~ 5412689 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU112895
CTTTCATGCAGACTGCATCAAGcactgtaaaacatttacagttattattaatttatttcttagcagatgcccttgtccagggcgacttacaaaatataagagcaatacaaagtgaaataatacagtgcaattcaatgcataatacattttacaaattacaatttacacaagcgTATACGAGATACAGTAAacatatgaggtcttacatcctagattgtaaaagctgataagtgcagacaagatgctaagtcacagtcaagggccaagggaaagggagcatagaggaatcaaaataaacaatacaagtaccaGTAAaccaaggcaagtagtatgacaaaacgttgtataagcgCTATCATTGTGTCAGTGCTatcaggagagtaaatgactaaattacaagttgtTGGTACTAAATGACCAGATGAAATAGTTCAAATTcaacaacacagacacatgcaatGAAATATTAATCCCTTTGTCGTCCAGAGTACCCATCTACACTACACACCTTTCCTGAGGTGTTCAGCGCTTCTGTTCCCCAGGATGGTGATGAACGTGTCTTCATCAGTgccatattttttttccccagcagCAAACAAGTcCTGAGCATCTTGTTCAATTTTTCCAGCATCAATTCCTTGCTGTCTACCTGCCTGCAGCAGAACCACCAACATCCTCTGGAAATGCCCCGAGGTATCTCCAGTAACATCTGCCTCAAGATCAGCATTATGCTCTTTTTGTATGCTGCAATGATTTCTTTGACCTGCTTGGGTGTCCTAGAGGCCAGAATCTCTACCAGCACCTTCTCATCAGTCCCAGCCCTTAATCGCACTCCTGAGTTCATGAACATCATAAAGAACTGGAGGAGTCATCAGACCAACAACAAGAGTCTCAAACTTCCCTCCGAGTTCTGATTTTAAATCCCCAATCAGGTCCTATggagaaaaaaagtgtaattttacattggaaaaaataaacgaCTTTGTAtttcatgaagaaaaaatatatctccaatttcacataagaacataaagtttacaaatgagaggaggccattcgacccatcgtgctcgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112895 True 1074 lncRNA 0.39 5 5407648 5412689

Neighbor

gene id symbol gene type direction distance location
AMCG00017465 NA coding upstream 28500 5378459 ~ 5379148 (+)
AMCG00017462 NA coding upstream 32194 5373357 ~ 5375454 (+)
AMCG00017463 NA coding upstream 37006 5355762 ~ 5370642 (+)
AMCG00017464 NA coding upstream 55823 5330756 ~ 5351825 (+)
AMCG00017456 NA coding upstream 134961 5232468 ~ 5272687 (+)
AMCG00017461 exosc9,LOC107746036,LOC101063486 coding downstream 12742 5425431 ~ 5459702 (+)
AMCG00017470 kiaa1109 coding downstream 125823 5538512 ~ 5624154 (+)
AMCG00017471 NA coding downstream 212335 5625024 ~ 5640242 (+)
AMCG00017474 fgf2,LOC106604591,LOC102794353 coding downstream 367191 5779880 ~ 5792505 (+)
AMCG00017475 NA coding downstream 396139 5808828 ~ 5816998 (+)
G90551 NA non-coding upstream 119 5405442 ~ 5407529 (+)
G90477 NA non-coding upstream 184896 5091668 ~ 5222752 (+)
G90475 LOC104962440 non-coding upstream 308761 5088593 ~ 5098887 (+)
G90436 NA non-coding upstream 496856 4901022 ~ 4910792 (+)
G90413 NA non-coding upstream 697574 4697938 ~ 4710074 (+)
G90561 NA non-coding downstream 27523 5440212 ~ 5463064 (+)
G90647 NA non-coding downstream 264212 5676901 ~ 5677244 (+)
G90691 NA non-coding downstream 565475 5978164 ~ 5978368 (+)
G90703 NA non-coding downstream 870468 6283157 ~ 6283441 (+)
G90709 NA non-coding downstream 989045 6401734 ~ 6402188 (+)
AMCG00017446 NA other upstream 719425 4662625 ~ 4688223 (+)
AMCG00017445 NA other upstream 801077 4592802 ~ 4606571 (+)
AMCG00017422 leprotl1,LOC103152176 other upstream 2712195 2687420 ~ 2695453 (+)
AMCG00017388 LOC108267694,LOC106608525 other upstream 5195712 207586 ~ 211936 (+)
AMCG00017386 dctn1,LOC101464740 other upstream 5309251 48007 ~ 98397 (+)
AMCG00017486 NA other downstream 1317049 6729738 ~ 7188643 (+)
G90877 NA other downstream 2255494 7668183 ~ 7671850 (+)
G90881 NA other downstream 2279896 7692585 ~ 7693347 (+)
AMCG00017508 NA other downstream 2393689 7806378 ~ 7813639 (+)
G90955 NA other downstream 2719679 8132368 ~ 8132854 (+)

Expression


Co-expression Network