G90648


Basic Information

Item Value
gene id G90648
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5676899 ~ 5677249 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU113031
AAGagcaaccatctctgcagcactccaccaatcaggcctgtatggtagagtggccagacggaagccactcctcagtaaaaggcacatgacagcccgcctggagtttaccaaaaggcacctgaaggactctcagaccatgagaaacaaaattctctggtctgatgaaacaaagattgaactcatgtctggaggaaaccaggcaccgctcatcacctggccaataccatccctacagtgaagcatggtggtggcagcatcatgctgtggggatgtttttcagcggcaggaactgggagactagtcaggatcgagggaaagatgaatgcagcaatgtacagagacatccttgat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU113031 True 351 lncRNA 0.50 1 5676899 5677249

Neighbor

gene id symbol gene type direction distance location
AMCG00017469 trpc3,trpc7,LOC107678610,LOC107757418,LOC108435597 coding downstream 156744 5491436 ~ 5520155 (-)
AMCG00017468 bbs7 coding downstream 192441 5467060 ~ 5484458 (-)
AMCG00017467 NA coding downstream 211338 5461065 ~ 5465561 (-)
AMCG00017466 NA coding downstream 251225 5404844 ~ 5425674 (-)
AMCG00017459 NA coding downstream 467082 5208933 ~ 5209817 (-)
AMCG00017473 cetn1,LOC106604590 coding upstream 87321 5764570 ~ 5767143 (-)
AMCG00017472 NA coding upstream 113599 5790848 ~ 5808491 (-)
AMCG00017476 ankrd50 coding upstream 504477 6181726 ~ 6211002 (-)
AMCG00017482 NA coding upstream 1041187 6718436 ~ 6721393 (-)
AMCG00017481 NA coding upstream 1095573 6772822 ~ 6773798 (-)
G90540 NA non-coding downstream 320583 5355262 ~ 5356316 (-)
G90520 NA non-coding downstream 420493 5256089 ~ 5256406 (-)
G90443 NA non-coding downstream 739733 4929386 ~ 4937166 (-)
G90411 NA non-coding downstream 1011732 4662836 ~ 4665167 (-)
G90345 NA non-coding downstream 1286409 4384583 ~ 4390490 (-)
G90670 NA non-coding upstream 102631 5779880 ~ 5780526 (-)
G90716 fat4,LOC104953884 non-coding upstream 713636 6390885 ~ 6391229 (-)
G90717 NA non-coding upstream 718399 6395648 ~ 6395865 (-)
G90718 NA non-coding upstream 719379 6396628 ~ 6396891 (-)
G90724 LOC103376870 non-coding upstream 1016484 6693733 ~ 6694106 (-)
G90502 NA other downstream 453852 5222473 ~ 5223047 (-)
G90501 NA other downstream 455878 5158384 ~ 5221021 (-)
G90400 NA other downstream 1132139 4542775 ~ 4544760 (-)
AMCG00017426 NA other downstream 2835005 2711302 ~ 2841894 (-)
AMCG00017418 NA other downstream 3061337 2601783 ~ 2615562 (-)
G90715 fat4,LOC106611628,LOC106604622 other upstream 710003 6387252 ~ 6389038 (-)
G90746 NA other upstream 1055986 6733235 ~ 7188648 (-)
G90749 NA other upstream 1435187 7112436 ~ 7113181 (-)
AMCG00017497 NA other upstream 1990775 7668024 ~ 7679350 (-)
G90937 NA other upstream 2153636 7830885 ~ 7832592 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G268159 NA non-coding NW_019172009.1 APWO02001607.1 28797 ~ 29216 (-)