G90715 (fat4,LOC106611628,LOC106604622)


Basic Information

Item Value
gene id G90715
gene name fat4,LOC106611628,LOC106604622
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 6387252 ~ 6389038 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU113104
CATTAGTCTACTTAATTTCAGGTTGATTATTTGGtcacttttttttcaaattagcaTACCTGAAAATTAAGTGTGAGACTGTAAACTAGCATCATctcttaaaacaaattaataaacatggcAAACTGGTATGATACCCTCCTTTAATCCTAAAAACTCTGGATGGCAACAGTTCTGCATTCACTTGCtggtgatttttctgtttttggatTTTAGGTGCAAAGCATGTAAGTATTTCTGGAAAAAACATCTGTCGTTTGGCTGCATGATAGATCTCTGTaagtttcattaaataaaacaatacctgTAAATCCAGATTTGCAGAGACAGTTGAAACCTCCTGGGAAATTCTGGCAAAGTGCCCCATTCTTGCAAGGGTTTGATAGGCACTCATTGACATCCCTCTCACAAGCCATTCCTGTGAATCCCTCTGGACAGCTGCAGGAAAACCCCCCAACCAGGTTGTGGCAGGTTCCACCGTTGTGGCAGGGAGACGGAAGGCACTCATCAATGTCAGTCTCACACAGGCTTCCGGCATATCCTGGCATGCAGTTACAGACGTAGGGCTGGAGAGGTTCGTTTGAAACGAGGATGACAGGGATGCTCTCCTCAGCCTTCATTTTGGGACTCACACTGAGGTGCTTCTTGCAGCTTCCTCTATTCTGACATgggctgtgtgtgcaggggtcATGGTCCACCGAGTCGATGCGCACTCCACTCTGCCTGTGAAGGATGTCTtttatactttcaaaaaacGTGGCTACTCCACTGGGGTTGACATACAGATTTTGGCCTCGCTTTACAGCAGCCATTAGGAAGGTCTTGTTATTTTGTTCAAAAGCCCCATAGAGCTGCACAGCAGTTCCCAGGCCAGCGAGCTGAGAGTTCGCTATGCGTAGGAAACTAAGATAGTTATTGGTGAAAAAGTCTCtaacattttgcacatttagACGGATTAAAATGCTGTTATCAACAGTGATGTTGTTAAATCCCACAAAGAAAACACGGATGTTGCTGTTGACAGCTCCGTGCACCCCATCACTGCTGCGAACTGTAAACTCAAAAGTCCCATCTGTAGACCTCGGATTGGAATTCAAATCGCATGTACCTGCAGTGATGCTGAAAAGATTTGGGACTGCTGACGTGAGAGAACAGCGGAAACTGTCCTGCACATCTGGGTCTTGTGGTTTCACGCTACCCAAACTTCCACCAGGAAACTGGTTACCAAAATAGTGGACAAAGATCTCCACTGTTCTAGCTTCTGACGGGTTGTCATTCTGGTCATTGACCTTGACGTGGACTGTTTCCGTGGAGGACATCTGTGGGACGCCCGAGTCCTTTGTCACCACTGACAGGTAGAAATCACTGATCTGCTCTCTGTCAATCTCTCTGCTCGTGCTCAGCACTCCTGCAGGACTAAGGCTGAAATAGCTTGTGGCAGATCCAGTGCTTTGTAAACTATATGTAAACGGTCCCTGGTTTGGAGGTAGATCGGGATCTGTAGAGCTAAGTTTCATTACAATGGTTCCTGCACGCTGATTCTCTGTCACCTCTCCTCTTGTCATGATCAGTGTGGGGCCATTGTCATTGATATCCTCTAATGTAACGATCAGGCTCGCACTCCCAGTAGCAGAAGGAGAACCGGAATCAACTGCCAGGACAGTCAGATTGTAAACAGGTGTGGACTCTCTATCAAGCTCTGCAGCTACTGAAACCTGACCTGTCTGGGGATTAATTGCAAAAGCATTTTTCTCATTATCAGAGCCCATGAAATAGGAGAACCTGCT

Function

symbol description
fat4 Is expressed in pronephros.

NR:

description
PREDICTED: protocadherin Fat 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU113104 True 1787 TUCP 0.46 1 6387252 6389038

Neighbor

gene id symbol gene type direction distance location
AMCG00017476 ankrd50 coding downstream 176250 6181726 ~ 6211002 (-)
AMCG00017472 NA coding downstream 578761 5790848 ~ 5808491 (-)
AMCG00017473 cetn1,LOC106604590 coding downstream 620109 5764570 ~ 5767143 (-)
AMCG00017469 trpc3,trpc7,LOC107678610,LOC107757418,LOC108435597 coding downstream 867097 5491436 ~ 5520155 (-)
AMCG00017468 bbs7 coding downstream 902794 5467060 ~ 5484458 (-)
AMCG00017482 NA coding upstream 329398 6718436 ~ 6721393 (-)
AMCG00017481 NA coding upstream 383784 6772822 ~ 6773798 (-)
AMCG00017485 NA coding upstream 587899 6976937 ~ 6981260 (-)
AMCG00017487 rpia,LOC107568642,LOC107695020,LOC107671341,LOC102776079 coding upstream 821320 7210358 ~ 7221745 (-)
AMCG00017489 NA coding upstream 903818 7292856 ~ 7299945 (-)
G90670 NA non-coding downstream 606726 5779880 ~ 5780526 (-)
G90648 NA non-coding downstream 710003 5676899 ~ 5677249 (-)
G90540 NA non-coding downstream 1030936 5355262 ~ 5356316 (-)
G90520 NA non-coding downstream 1130846 5256089 ~ 5256406 (-)
G90443 NA non-coding downstream 1450086 4929386 ~ 4937166 (-)
G90716 fat4,LOC104953884 non-coding upstream 1847 6390885 ~ 6391229 (-)
G90717 NA non-coding upstream 6610 6395648 ~ 6395865 (-)
G90718 NA non-coding upstream 7590 6396628 ~ 6396891 (-)
G90724 LOC103376870 non-coding upstream 304695 6693733 ~ 6694106 (-)
G90751 NA non-coding upstream 371617 6760655 ~ 6876968 (-)
G90502 NA other downstream 1164205 5222473 ~ 5223047 (-)
G90501 NA other downstream 1166231 5158384 ~ 5221021 (-)
G90400 NA other downstream 1842492 4542775 ~ 4544760 (-)
AMCG00017426 NA other downstream 3545358 2711302 ~ 2841894 (-)
AMCG00017418 NA other downstream 3771690 2601783 ~ 2615562 (-)
G90746 NA other upstream 344197 6733235 ~ 7188648 (-)
G90749 NA other upstream 723398 7112436 ~ 7113181 (-)
AMCG00017497 NA other upstream 1278986 7668024 ~ 7679350 (-)
G90937 NA other upstream 1441847 7830885 ~ 7832592 (-)
G90939 LOC105903575 other upstream 1603099 7992137 ~ 7996595 (-)

Expression


Co-expression Network