Gene
RNA
| Item | Value |
|---|---|
| gene id | G90716 |
| gene name | fat4,LOC104953884 |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030131.1 |
| NCBI id | CM030131.1 |
| chromosome length | 33043351 |
| location | 6390885 ~ 6391229 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| fat4 | Is expressed in pronephros. |
| description |
|---|
| PREDICTED: protocadherin Fat 4 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU113105 | True | 345 | lncRNA | 0.42 | 1 | 6390885 | 6391229 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00017476 | ankrd50 | coding | downstream | 179883 | 6181726 ~ 6211002 (-) |
| AMCG00017472 | NA | coding | downstream | 582394 | 5790848 ~ 5808491 (-) |
| AMCG00017473 | cetn1,LOC106604590 | coding | downstream | 623742 | 5764570 ~ 5767143 (-) |
| AMCG00017469 | trpc3,trpc7,LOC107678610,LOC107757418,LOC108435597 | coding | downstream | 870730 | 5491436 ~ 5520155 (-) |
| AMCG00017468 | bbs7 | coding | downstream | 906427 | 5467060 ~ 5484458 (-) |
| AMCG00017482 | NA | coding | upstream | 327207 | 6718436 ~ 6721393 (-) |
| AMCG00017481 | NA | coding | upstream | 381593 | 6772822 ~ 6773798 (-) |
| AMCG00017485 | NA | coding | upstream | 585708 | 6976937 ~ 6981260 (-) |
| AMCG00017487 | rpia,LOC107568642,LOC107695020,LOC107671341,LOC102776079 | coding | upstream | 819129 | 7210358 ~ 7221745 (-) |
| AMCG00017489 | NA | coding | upstream | 901627 | 7292856 ~ 7299945 (-) |
| G90670 | NA | non-coding | downstream | 610359 | 5779880 ~ 5780526 (-) |
| G90648 | NA | non-coding | downstream | 713636 | 5676899 ~ 5677249 (-) |
| G90540 | NA | non-coding | downstream | 1034569 | 5355262 ~ 5356316 (-) |
| G90520 | NA | non-coding | downstream | 1134479 | 5256089 ~ 5256406 (-) |
| G90443 | NA | non-coding | downstream | 1453719 | 4929386 ~ 4937166 (-) |
| G90717 | NA | non-coding | upstream | 4419 | 6395648 ~ 6395865 (-) |
| G90718 | NA | non-coding | upstream | 5399 | 6396628 ~ 6396891 (-) |
| G90724 | LOC103376870 | non-coding | upstream | 302504 | 6693733 ~ 6694106 (-) |
| G90751 | NA | non-coding | upstream | 369426 | 6760655 ~ 6876968 (-) |
| G90759 | NA | non-coding | upstream | 492413 | 6883642 ~ 6883968 (-) |
| G90715 | fat4,LOC106611628,LOC106604622 | other | downstream | 1847 | 6387252 ~ 6389038 (-) |
| G90502 | NA | other | downstream | 1167838 | 5222473 ~ 5223047 (-) |
| G90501 | NA | other | downstream | 1169864 | 5158384 ~ 5221021 (-) |
| G90400 | NA | other | downstream | 1846125 | 4542775 ~ 4544760 (-) |
| AMCG00017426 | NA | other | downstream | 3548991 | 2711302 ~ 2841894 (-) |
| G90746 | NA | other | upstream | 342006 | 6733235 ~ 7188648 (-) |
| G90749 | NA | other | upstream | 721207 | 7112436 ~ 7113181 (-) |
| AMCG00017497 | NA | other | upstream | 1276795 | 7668024 ~ 7679350 (-) |
| G90937 | NA | other | upstream | 1439656 | 7830885 ~ 7832592 (-) |
| G90939 | LOC105903575 | other | upstream | 1600908 | 7992137 ~ 7996595 (-) |
