G90857


Basic Information

Item Value
gene id G90857
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 7624692 ~ 7626452 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU113357
CTTGATTCACTGATTTATTTCACTTGTCATGAAAGGTTTTGTATTGATGACCCAGAATAGGGGTACTGTCTTCCTACCCACACAGCAGGTTAcagaattattaaaatcaaaatgcacacacagagacacatacacaaaaaaaaaaatcatccgTAACTTCAAGCACTCCACAATACACGCCGGACAACACTAAAGGAAGCTGTCCAGGAATTTCAATGCTCAATTTACAGGATAAAACAATCTATTCAAACTCATTCCAGTCTCTGTGCAGATACGGGTTCCTGATTGTTATTCTGGCTGTGCTGTCCACAGGAGTCGTTTCTCTGCGAGTCGGTGTGGTTGCACCAGTGATTGTGAATGAATGAACTCCTTCTGCAGACATAGCAGGCCAGCAGTGTCCGACTGTGATAGGGACTCATGCATAGAGAGCTCAAACACAAGCATAGGGACTGCACAGAGCCAGGGAAGAGAGCCAAACACGAGAAAAGGGGAGTAAATACTCATATTGCATGTCAGTCTCAGATTGCATCTGTCTGGGGTAGCAGTACTTCACGCCTGTAGCACCTTTAAATTGGAATTGACAGGGTGAGAGAGTGCAGATTGAGTACGGTAGACCAATGCGAATATAGAGGGGGTTGCAGAAGCAGGGAGAAAGACAAAGGACACCGAAGAGGTAGGCTGAGAAAGGGCAGAAAGATGGAGCGAGGCAGGGAAAGGAGAGATCCAGAACTGGAAAAGCCAAGAGACAGGCTTGTGAAGGAGCAGGAGGTTATGGGAAGATGGGGACAGGACAGGAGAGGTAGCTCATAACAGGCTCTGTACAGGTGTCCGGTTAGGTTGTGAGAAGAAGGACTATGGTTGCATGGGTGCATTTCCAGTTCACTGTGCAGAGGTGCAGCTGTCCCCCTCTTTGCTGGACACTAGATCCTGGTCACTAGACTGGACAGAAGAGTTAGGGGGTACGGCATCTGTGTGGGGGACACCGTTTCGAGTCTCTGGCTCAGTCTCTTTTGGTGGGACAGTGTTGGAGTCAGTCCCTGTGTTCAGTCTGGTCTCTACAGTCTCCGTGCTGGAAACCGTGTGCGTGGACTGTGGGACAGTCTCCGCGGCCTCCGATCCCTCGGGCTGGGCCGCCCTGCGCTCCAGTGCCAGCTGCATGGCCCAGATACTGAGCGGGCGCATGTAGGCGAGCGAGCGGAAGATGCCCCTCTCGCAGTAGGCCTCGGGGGTTTGGAACGCCATGCCGAGTCGCTCCCACACGGTGCGGTAACACCCCTCCGCTGCCCGCATACCCTCCTCCACCATCCCCTGGCTCATGGATCATAGTGGCAGCCAGGCCGTACACCACTCCGACCCACACCTCGTCCGACTGAACACTGGAGCAGTCCGGCACACCCTCCGGCCGCATCCCATTCACAGCGCCCATCTTTCCCCCAGCAAACTGCATCACATTCAGATCAAACACTGTGCGGAGGGCCTGCCGCACCTTCTCTGTCGGGAATGCCTgggagagacaaaaaaaaaaaaaaaaaaaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNatcatcatcatcatcatcatcatcatcataacagcCACATGTTACTGAAATCTGAGCACAGAAccaagacagagggagagaaagtagGGTGAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU113357 True 1660 lncRNA 0.51 2 7624692 7626452

Neighbor

gene id symbol gene type direction distance location
AMCG00017494 NA coding upstream 18493 7605288 ~ 7606199 (+)
AMCG00017491 pik3c3 coding upstream 149670 7459064 ~ 7475022 (+)
AMCG00017488 eif2ak3,LOC107683275,LOC106611393 coding upstream 345200 7240443 ~ 7279492 (+)
AMCG00017483 NA coding upstream 778586 6844975 ~ 6846106 (+)
AMCG00017484 NA coding upstream 779730 6844559 ~ 6844962 (+)
AMCG00017496 NA coding downstream 15823 7642275 ~ 7647260 (+)
AMCG00017493 NA coding downstream 28931 7655383 ~ 7658125 (+)
AMCG00017495 NA coding downstream 37256 7663708 ~ 7667075 (+)
AMCG00017503 NA coding downstream 75662 7702114 ~ 7712194 (+)
AMCG00017510 NA coding downstream 204546 7830998 ~ 7835213 (+)
G90743 NA non-coding upstream 471948 7112416 ~ 7152744 (+)
G90733 NA non-coding upstream 613631 6974661 ~ 7011061 (+)
G90737 NA non-coding upstream 732082 6874967 ~ 6892610 (+)
G90738 NA non-coding upstream 740735 6883654 ~ 6883957 (+)
G90731 NA non-coding upstream 861620 6728032 ~ 6763072 (+)
G90878 NA non-coding downstream 45691 7672143 ~ 7672373 (+)
G90879 NA non-coding downstream 51447 7677899 ~ 7678465 (+)
G90905 NA non-coding downstream 164007 7790459 ~ 7790658 (+)
G90915 NA non-coding downstream 224716 7851168 ~ 7851374 (+)
G90917 NA non-coding downstream 295740 7922192 ~ 7922640 (+)
AMCG00017486 NA other upstream 436049 6729738 ~ 7188643 (+)
AMCG00017446 NA other upstream 2936469 4662625 ~ 4688223 (+)
AMCG00017445 NA other upstream 3018121 4592802 ~ 4606571 (+)
AMCG00017422 leprotl1,LOC103152176 other upstream 4929239 2687420 ~ 2695453 (+)
AMCG00017388 LOC108267694,LOC106608525 other upstream 7412756 207586 ~ 211936 (+)
G90877 NA other downstream 41731 7668183 ~ 7671850 (+)
G90881 NA other downstream 66133 7692585 ~ 7693347 (+)
AMCG00017508 NA other downstream 179926 7806378 ~ 7813639 (+)
G90955 NA other downstream 505916 8132368 ~ 8132854 (+)
AMCG00017526 paics,LOC107555752 other downstream 1061245 8687697 ~ 8700754 (+)

Expression


Co-expression Network