XLOC_006176


Basic Information

Item Value
gene id XLOC_006176
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 39845264 ~ 39873628 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013660
CCGGCGTCAGTGTCAGTGTACAGAGAAAACGGTCGGAAGAGAAGCCGAAACTACATGCTTGCTGCTGTCCTCACTGAAGGTCAGACTCGTCTAAATTCTTCCATGATCTGTTACATTCTGCTGGATGATGAAGTTATGAGCCGATATATCTGGAAGCTGCAGAACAGAGCTCTGAACCAAGCCATGGAACAGTTAAAGAACGCTCCTCTGTCATGATGAATGCTGGAGTATCAGCCTGACAGCAGGAGTCTTTCATCTCTCTCTGGAGTCTGTGTGGAGCCTGTCAGCCTCTCATCACAGACATCGGCAGCTCTAGATTTACAGCCGTGAGGTGAGACAAAAGACAGCATTTTTCAGTTGCTGCTGTGCCAGTCATCAGCGGGTCAGATCTCATTAGCCGTCTGATTTATGGAGACCGAGGAAGGGTCACCGGATGATTTAACGGTGATAGTGGAAGTGTCATGGAATGCACCAGAATCTGTTTTGGGGAGATTGAGCCgaaatatattttcagtttagtACTACtgtgaaaaaataacatgcacatatacacagaTACAGTTGAACaaaagctgcacaatatatcgtttgggcatcgatatctcaatgtgtgcgtctgcaatagtcacatcacaagatatcCGGTCAAAACACATTTGTGGAGACACAATTTAACCACACATAATTTAACCACTGCAGAGTGAAAGTTTAAAATGTTCATGTGTTTTTAATGCATTTGTGAGCATTTTAAGAGTTTGAAACATTTAAAGAGCATTAAAAAAGAgca
>TCONS_00013661
CGGCGTCAGTGTCAGTGTACAGAGAAAACGGTCGGAAGAGAAGCCGAAACTACATGCTTGCTGCTGTCCTCACTGAAGGTCAGACTCGTCTAAATTCTTCCATGATCTGTTACATTCTGCTGGATGATGAAGTTATGAGCCGATATATCTGGAAGCTGCAGAACAGAGCTCTGAACCAAGCCATGGAACAGTTAAAGATTTTTGCATCTGCATCGTTTCTGGGAGCATTTCAGACATTCCTAATTACCCAAAAAGGACTTTCTGTAAAATCCAGACTATAAAACAACAAGCTAATGAAAGGAGGACAAAAAGCATGTAGTTCATCACCCCTGGCTTTATGTCCAGTTGTGTAAATGGTTCATTTTACAAATCGTAAAGTGTTATTCTGTGGTTGGAGAAAGACACTGACATTTATGATGATTTTTTATATTGCTGCTCACGCTAGATTACTCATACTGGCATGGATGTTTTGACGTGGCCTCGACACCTCTGTGTTTGGCTGAGACTCTAATTGCATTAGTGGTTTGTGGGAGCGGATTCTCTAGGGTTGATGTTTGGGTCGACCGCTCTGTGGTTCAAGGTGAAGGCCTTAAATGATTCAACAGGATGCTGCTCGCTTTGCTTGGTTAAACCATCAGACTTGATTAGCAGTGAGTGCTAAGACTGTTATCCTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013660 False 787 lncRNA 0.43 3 39845264 39873628
TCONS_00013661 True 674 lncRNA 0.43 3 39845265 39846714

Neighbor

gene id symbol gene type direction distance location
XLOC_006175 NA coding upstream 117800 39684471 ~ 39727464 (+)
XLOC_006174 marveld1 coding upstream 311899 39532050 ~ 39533365 (+)
XLOC_006173 BX324188.1 coding upstream 508081 39324865 ~ 39337183 (+)
XLOC_006172 si:dkey-85a20.4 coding upstream 522138 39277178 ~ 39323126 (+)
XLOC_006171 FRMD1 coding upstream 573759 39236141 ~ 39271505 (+)
XLOC_006177 BX005216.1 coding downstream 95721 39969349 ~ 39969465 (+)
XLOC_006178 golga7bb coding downstream 145373 40019001 ~ 40061830 (+)
XLOC_006179 NA coding downstream 453932 40327560 ~ 40330374 (+)
XLOC_006180 slc25a28 coding downstream 461099 40334727 ~ 40354313 (+)
XLOC_006181 NA coding downstream 486532 40360160 ~ 40419304 (+)
XLOC_006165 NA non-coding upstream 1561065 38226076 ~ 38284199 (+)
XLOC_006163 BX322660.1 non-coding upstream 1694627 38150517 ~ 38150637 (+)
XLOC_006162 BX005106.1 non-coding upstream 2170970 37674178 ~ 37674294 (+)
XLOC_006160 NA non-coding upstream 2300943 37538653 ~ 37544321 (+)
XLOC_006186 BX294129.1 non-coding downstream 880952 40754580 ~ 40808436 (+)
XLOC_006189 NA non-coding downstream 1114787 40988415 ~ 40989361 (+)

Expression


Co-expression Network