G91321


Basic Information

Item Value
gene id G91321
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 10357400 ~ 10361148 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU113927
atgTATACATGCTTTAAACATGCAACAACATGTTGGATTTCATACTAAACCAGGGGAAGATGCAAGTTTATGAGCCATGAAAAATCAACGTTTGCCAATCTTTGCTTGAATTTGCGTAAATATGTATAAACCTGGTTGTACATATCTTCTTCGCTGAAAGAAATTCCTTCAGAATCAAGACCCTAAGGACACTgatttttctctcctcttcaaacaaatgaaagaaacctGATGTCTCATACATATaagacaacacaaacaaaagatatATTATAATGCAAGATTGCAGGCTGCATGAAGATAAACATAGAAGATGGATGAACACAACTATATTGTGAACACTCTGCGAGCACATTCACAAGATCCATACAGGAAATAAATGGGTGCGTAATCTTtaggatgttttcttttttttttttttcatacatgaGATGGGTTTCAGCTTGCAGACTTTTCATCCTTAAAGCATGTAGAAGTACATAAGCAGGAGGATGACACAACAAGCAGTGTAGTTGGCTTTGGCCCTGCATTGAAGTATTATCTAGGCTACagtgagattatatatatatatatatatatacacacacacacatagatacatacatacatgaatacacaTATGCGCACACATTTACTGCCACAGCTTTCAGCTGTTGCATTTGTGACAGCATACAGGTCTAAGAATCAAGAATGTAATACATCTCAATGGAGTACAATAATCAAAATCTCTATTGTGACTTTCAAAGCAAGAACAAGGGACAAAGaatcatgttttgtatttaaaatagtgGGAAATCTAACAAGTGGATATCATAGACAAACCAAAGTTTTGGAAATAACAAGCAGGCATGAAGGTATAAAATGATGTTTCTCTGGTAAGTTTTAGAAAAAATAGCTTTTTGGTAGTTTGTTGctttatatacatgcatatgtgtaaatgtatagtCAAAGTATAGGTTGATTGATCAGTAAGATCCAGATGTATTGCACCTTCTGTTCCATTTTGAATGACCACTACAAGTCCCAAGATTTTGTGCCCCTTTTATCTGCTGCATTTACTAAATTGTGtcacattataaatgtaattctgGTTAAAATTTATTAAGGTAAAAGGGCACAAGCTCtggacaaacaataaaaaaaaaactctgaagcaattgaatattttgtatgttatcagatgacaacaaaaaaaatctaatcctTTGTTAAATGACTGCTTTTGGCAGTACATCATTCTGTAGTCTGTAAGTACTTGTTGTTAAGAGAAGTGCTTCTAAAAAGCTTATAAActgtatacataaatatgtatttttattgcacGTTTAAAGGGAATTTACTTCACTTACTgcgaaggaaaaaaaataaaaaaataaaaaaaatattttctttatatgtgAACATGGAAGTCCATCCTGTTGCTTGCTTTTGTTATATCTAAACAAACATTAGCCATGTAGTCTTATTTAGGATTCCAGTTTAAAGAGGATGAAAATATACTTGGATACATCAATTGACTACcgtgaacattttttttatttatttagttttgttttgtttagggcAGAATAActtctatatattttcttcatccAGAAATGGCCATTACAGTGACGATAATTATGTGCCGAAAGGTATGTTACCTGTAAATGTCTGGCTTTCTTAATACATTGAAACAAGTTGCAACTTTATACTGGCATGGCATagaattatgtttattttttattattttcctttattgtaGAATTATTCTGGTGCCAGTTTGTATATTTTGAGTGCTTCTGTACAAATAGAGTGaatgcaaaatatgcaattGTGCCTTTTTATACCTATTGGTATGATTCAGTGTTGGGTGGTAATGGAAGAACAAAGTGTGCTGGGATGCTGGGCTTTTCAATATGTTTGGATGGTACTTAcctaaaaatgttatataatattgattatttattatattgccAGATTCTGCCAAGTCAGTACCCAGGAGGTGAGGAGTTGGCATTAGGCTAAAAATAGGGTGTTGACTCAGACAGATGCTACATTTCAAGCACTTCTTGAGTATtttgaacattaaataaataggtTCTGTTTACAATGGACATGCTTACAATTCAGAGGCAGAGCAGACAGACAGCCATTACAATAAGTAATCAACAATTAACGTGAATTAGCAAATGCTAAAATACATGGAAACAGTCATTAAACTgtccaaaaatatattgtagtgatCCTGTAGTGATCCCCTTGCTAAAGGGCCTGGGCCTTTTATGGATGGGGTAAAGTTGCTGCACTTGTGGCACGGGAGACTGGGGCTCAAATCTCGCCGTGGCCGGAACCCCCCAGGGTGTTACAATACATAGCGAGGTTGAAATGAGCTGCCTTAGCAAATGTTCATACTAAATGCATGTATTCATAGTAAATAACAAAGTGCAGTGTATGGTGCAGAAATATGATGTGGACACATTTGACACACTGAATAGGAAACGAATGATGTCAAACTGGGGGCGGGGCTATTGCTTGGCAGAATCTGATCTATCTTCTGGCTACTCAGATAAAAAGACCAGTCAAACTCCTTTTGCATTATGGAAAAATCTAACATTATAATATGGTAAGACTTTTACCATCTTTTAAGACACGACATTTCACTTCAAACATGTCCAGAGctgttatgcaaatgtattttatgttaataatgtttgttttattttatttttcccagaaAGTAGCACCTGATCATTATATTACAtacatgtttcattatttttgtcgGTGAAACAGagattttttaacttttatgcATGCAACCCTTACAGACTtacacatttctataaaaacacTTGAAGACTTTTGACTGTTCAGACATGAGTAGACCAGAAATCAATTTGAAAGATTAACTAGGGATTGATGAAAACCTGAAATGGGGGTGCTGGCTGAATGATGACCTCAGGAAGCAAAGCAATTCTAATCAGACAGTAATTCTCAAAATCCTTGTTTAAATTCTGTGTGGTCTATAGGATGTAAGTGATTCAAGTCCCATTTTTCCCATCTCTGAAATTCTCATAGGTTCAATCATCTTGGTAGTCAAATTCAGTCCCCTGTAAAGTGGTATTCATCTCAAGAAATTCCAGTCCAGCAAAGAGTTATATGAAAGTAACAAATGATCTTAACCAGTAATTCATTGGGCAATCCATAATGTAAAGGTAGTTTTGGAAGAGATGTAGTTTAGtaagtttttatttcaaatgatcaAGAGCAATACATGAACACTACCAATCATAAAGTTTTACGTTGAGGTCTTCAAGGGTGAAACGTTTAGTAGGTAAGGCAGGAGGATATCGCATGGTATACATTTGGGAAACAAATTCCAGATGTCCTTAATATGGTACTTAAAACTTCCagcaaaatctaaaatgtataattttgtttgtttgactaGTTATCTTTAAAGTCACTGGGATCAGAATTAAAGTAGAATAATATTCTCACAGGAAAATAGTTTCCTCCTACCTGGGGTATATTTTCAGCCGGTTGTTCCTAAGATTTAAAGCACTCGCATTCAGTGTGATGAGATCTGTTTGTAATATTAATCATGAACTATTCTTCTGCGACTTGGATGTTGATATTGAAACAAGGAACAATTTATCATTGTTTATTATGAGTCACTATGCACGCAGCTATGCTGAACATGGCAAAATGTATTGAACGCAAGTCCAC

Function

GO:

id name namespace
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0035725 sodium ion transmembrane transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU113927 True 3711 lncRNA 0.34 2 10357400 10361148

Neighbor

gene id symbol gene type direction distance location
AMCG00017554 NA coding downstream 810086 9495728 ~ 9547314 (-)
AMCG00017550 nwd2 coding downstream 985321 9342114 ~ 9372079 (-)
AMCG00017548 NA coding downstream 1071897 9245216 ~ 9285503 (-)
AMCG00017549 NA coding downstream 1125647 9229000 ~ 9231753 (-)
AMCG00017547 sh3rf1 coding downstream 1172654 9164861 ~ 9184746 (-)
AMCG00017555 LOC106608544 coding upstream 126149 10487297 ~ 10496150 (-)
AMCG00017559 NA coding upstream 586598 10947746 ~ 10948005 (-)
AMCG00017558 NA coding upstream 586962 10948110 ~ 10949709 (-)
AMCG00017557 stim2 coding upstream 932460 11293608 ~ 11315800 (-)
AMCG00017572 LOC108228807 coding upstream 995657 11356805 ~ 11387412 (-)
G91311 NA non-coding downstream 59592 10297405 ~ 10297808 (-)
G91301 NA non-coding downstream 677179 9677471 ~ 9680221 (-)
G91300 NA non-coding downstream 681621 9675546 ~ 9675779 (-)
G91298 NA non-coding downstream 694612 9662564 ~ 9662788 (-)
G91297 NA non-coding downstream 724541 9632645 ~ 9632859 (-)
G91354 NA non-coding upstream 706565 11067713 ~ 11068015 (-)
G91355 NA non-coding upstream 790230 11151378 ~ 11151698 (-)
G91359 NA non-coding upstream 906958 11268106 ~ 11268595 (-)
G91362 NA non-coding upstream 926707 11287855 ~ 11288163 (-)
G91371 NA non-coding upstream 929180 11290328 ~ 11291234 (-)
G91119 NA other downstream 1601493 8755288 ~ 8755907 (-)
AMCG00017531 NA other downstream 1608657 8732760 ~ 8748743 (-)
AMCG00017520 NA other downstream 1842445 8473490 ~ 8514955 (-)
G90939 LOC105903575 other downstream 2360805 7992137 ~ 7996595 (-)
G90937 NA other downstream 2524808 7830885 ~ 7832592 (-)
AMCG00017556 NA other upstream 152 10361300 ~ 10497104 (-)
AMCG00017563 NA other upstream 1142876 11504024 ~ 11506820 (-)
AMCG00017569 NA other upstream 1516212 11877360 ~ 11900600 (-)
AMCG00017582 NA other upstream 1946633 12307781 ~ 12322370 (-)
AMCG00017631 NA other upstream 4072010 14433158 ~ 14484818 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110500755 LOC106608544 misc NC_048585.1 CM023239.2 56238529 ~ 56455028 (+)