G91452 (cc2d2a)


Basic Information

Item Value
gene id G91452
gene name cc2d2a
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 11879614 ~ 11880499 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU114078
acttATAATTGCAGTAATTAGAGATTTGATTACACAACATGTTCAGTAATCTCTTATATGGTATATAAATTAAGGAATACTGCAGTAATTGTGTGTTTTCGGTTAAATCTGTAAGGTAAATTTCTATAAGAAGTTTACCATAACGTTTATATTTCATAGCAAAATAATGCAGGTGAAAAAGCAAGAATGTGAGGTTCAATGCCTGGAGTTGAAGGtgaaaaacacagagaagtcTTCTGTATCTATCTGGTACGGATCAGAGAGGacacatacacccacacagAGAGTACGTTGTTCGGGTACGGATGGACATGAACAGCCAGCGCAAACTCCACGCTGGACACCTCGACGTTATGCACTCCGGTGCTGTACACGGCTTCCACCACAGGGCCGATCTCAGAGAAGGACTTCACTCTTCACTGCTTCAGAAGAGCCCAACTCACCCTGTAATCCCCCAGCAGACTCTGCAGCTCCATCCTGTGCTCGTCCCCCACGTCCTTCCCTCCGCTCAGCTCCAGCTTGGGCAGGAAGTGCCTGAGCGTGGAGGTGCAGTACCGGTTCCAGCGGGTCGGGTGTCTGGGGCGCCACTCCATGATCTTGTCCTTCAGGATCTTCTCAATCCTATATGGGGAACAACCCTTcagattctgtttttttttctgtcccacTCAAAGACCAAATTTAGTCCTTGACTAATTAGTTACCTATCCTGTagttctgctgctgctgccttaTCTGTGCGGCGATACACGAGCTCCTCAGGCTACggtatgaaaataaaagatcaTTTATAAGG

Function

symbol description
cc2d2a Acts upstream of or within photoreceptor cell outer segment organization. Located in photoreceptor connecting cilium. Is expressed in central nervous system; pronephric duct; and receptor cell (sensu Animalia). Used to study Joubert syndrome. Human ortholog(s) of this gene implicated in Joubert syndrome 9; Meckel syndrome 6; and intellectual disability. Orthologous to human CC2D2A (coiled-coil and C2 domain containing 2A).

NR:

description
PREDICTED: coiled-coil and C2 domain-containing protein 2A isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114078 True 796 TUCP 0.46 2 11879614 11880499

Neighbor

gene id symbol gene type direction distance location
AMCG00017562 fbxl5,LOC106674637 coding upstream 141 11867165 ~ 11879473 (+)
AMCG00017561 NA coding upstream 354600 11507876 ~ 11525014 (+)
AMCG00017560 NA coding upstream 476943 11390189 ~ 11402671 (+)
AMCG00017552 NA coding upstream 1984181 9893228 ~ 9895433 (+)
AMCG00017553 NA coding upstream 2210638 9630401 ~ 9668976 (+)
AMCG00017577 NA coding downstream 143757 12024256 ~ 12024505 (+)
AMCG00017578 NA coding downstream 144034 12024533 ~ 12029958 (+)
AMCG00017575 NA coding downstream 218491 12098990 ~ 12118066 (+)
AMCG00017576 LOC106589762 coding downstream 249164 12129663 ~ 12130950 (+)
AMCG00017581 rab28,LOC106600633 coding downstream 267770 12148269 ~ 12158241 (+)
G91387 NA non-coding upstream 462874 11416521 ~ 11416740 (+)
G91386 LOC106577485 non-coding upstream 464512 11408294 ~ 11415102 (+)
G91363 NA non-coding upstream 588038 11290288 ~ 11291576 (+)
G91361 NA non-coding upstream 591451 11287861 ~ 11288163 (+)
G91353 NA non-coding upstream 811599 11067713 ~ 11068015 (+)
G91480 LOC107549164,LOC106560248,LOC106584219 non-coding downstream 55128 11935627 ~ 11935961 (+)
G91481 NA non-coding downstream 55602 11936101 ~ 11936339 (+)
G91490 NA non-coding downstream 94910 11975409 ~ 11975612 (+)
G91545 NA non-coding downstream 555245 12435744 ~ 12435984 (+)
G91549 NA non-coding downstream 609584 12490083 ~ 12490296 (+)
G91281 LOC103376870 other upstream 2296334 9519773 ~ 9583280 (+)
AMCG00017527 tkfc,LOC107731922,LOC107095500 other upstream 3114711 8751713 ~ 8764903 (+)
AMCG00017526 paics,LOC107555752 other upstream 3178860 8687697 ~ 8700754 (+)
G90955 NA other upstream 3746760 8132368 ~ 8132854 (+)
AMCG00017508 NA other upstream 4065975 7806378 ~ 7813639 (+)
AMCG00017600 NA other downstream 1316396 13196895 ~ 13259760 (+)
AMCG00017615 sorcs2,LOC106577493,LOC107590992,LOC107656200,LOC107722411 other downstream 1900767 13781266 ~ 13830819 (+)
AMCG00017620 htra3,LOC106577909 other downstream 2145137 14025636 ~ 14039063 (+)
G92046 NA other downstream 3196826 15077325 ~ 15084278 (+)
AMCG00017651 NA other downstream 3207633 15088132 ~ 15090829 (+)

Expression


Co-expression Network