G91480 (LOC107549164,LOC106560248,LOC106584219)


Basic Information

Item Value
gene id G91480
gene name LOC107549164,LOC106560248,LOC106584219
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 11935627 ~ 11935961 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU114112
CCGTTTATCAATATCTCCGTGCTGGAGCTGGACAAAGCGGGCGCTGATGGCTGCAATGTAGCTCTGCTGATTAGAGAAGGCCACCCGCCCTGCACCTTTGGGGTACTTCAGCTCAGGGTCAGTATCGATTCCCGCATAGCAAACGCCACCGTAGAGACGATCCATTATCATAGCCAGCTCCActggggaagagagaaagagagttgTGGCTCTGAGGGGCTATCCTGCTGCAGCGCAGTGTGACAGAGAGCCAGTTTTTGACAAGACACAAAAAGGAGTGATAAGATCAATCCAAGCTCTATTTTTCTAGCTTCGTCTGGAAACGGCCgatttat

Function

NR:

description
PREDICTED: cytoplasmic polyadenylation element-binding protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114112 True 335 lncRNA 0.51 1 11935627 11935961

Neighbor

gene id symbol gene type direction distance location
AMCG00017562 fbxl5,LOC106674637 coding upstream 56154 11867165 ~ 11879473 (+)
AMCG00017561 NA coding upstream 410613 11507876 ~ 11525014 (+)
AMCG00017560 NA coding upstream 532956 11390189 ~ 11402671 (+)
AMCG00017552 NA coding upstream 2040194 9893228 ~ 9895433 (+)
AMCG00017553 NA coding upstream 2266651 9630401 ~ 9668976 (+)
AMCG00017577 NA coding downstream 88295 12024256 ~ 12024505 (+)
AMCG00017578 NA coding downstream 88572 12024533 ~ 12029958 (+)
AMCG00017575 NA coding downstream 163029 12098990 ~ 12118066 (+)
AMCG00017576 LOC106589762 coding downstream 193702 12129663 ~ 12130950 (+)
AMCG00017581 rab28,LOC106600633 coding downstream 212308 12148269 ~ 12158241 (+)
G91387 NA non-coding upstream 518887 11416521 ~ 11416740 (+)
G91386 LOC106577485 non-coding upstream 520525 11408294 ~ 11415102 (+)
G91363 NA non-coding upstream 644051 11290288 ~ 11291576 (+)
G91361 NA non-coding upstream 647464 11287861 ~ 11288163 (+)
G91353 NA non-coding upstream 867612 11067713 ~ 11068015 (+)
G91481 NA non-coding downstream 140 11936101 ~ 11936339 (+)
G91490 NA non-coding downstream 39448 11975409 ~ 11975612 (+)
G91545 NA non-coding downstream 499783 12435744 ~ 12435984 (+)
G91549 NA non-coding downstream 554122 12490083 ~ 12490296 (+)
G91597 NA non-coding downstream 771349 12707310 ~ 12710716 (+)
G91452 cc2d2a other upstream 55128 11879614 ~ 11880499 (+)
G91281 LOC103376870 other upstream 2352347 9519773 ~ 9583280 (+)
AMCG00017527 tkfc,LOC107731922,LOC107095500 other upstream 3170724 8751713 ~ 8764903 (+)
AMCG00017526 paics,LOC107555752 other upstream 3234873 8687697 ~ 8700754 (+)
G90955 NA other upstream 3802773 8132368 ~ 8132854 (+)
AMCG00017600 NA other downstream 1260934 13196895 ~ 13259760 (+)
AMCG00017615 sorcs2,LOC106577493,LOC107590992,LOC107656200,LOC107722411 other downstream 1845305 13781266 ~ 13830819 (+)
AMCG00017620 htra3,LOC106577909 other downstream 2089675 14025636 ~ 14039063 (+)
G92046 NA other downstream 3141364 15077325 ~ 15084278 (+)
AMCG00017651 NA other downstream 3152171 15088132 ~ 15090829 (+)

Expression


Co-expression Network