G91556 (wdr1,LOC107717326,LOC106583413)


Basic Information

Item Value
gene id G91556
gene name wdr1,LOC107717326,LOC106583413
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 12506627 ~ 12509143 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU114209
GTCCTTCTCCGACAATTGCTAATCTCTTACTATCTTCAGTCCAGGCAATGTCCTTAACCTTTCCTGAAAAGGGCTGATACTCGTACTTCAAAAGATGCTCTTTTTGAGTAGTATCCCAGATCCTGATCTTTCCCGAAACATCTCCAGAGGCAATGTAAAACCCACTGGGCGCATACTTTGCAACAATCACTTGATGTGCATGTTCAGTGTAGATATCTGCAATGGCTGGATTatCAATGTTTCGGATGATGACACTCTTTCCATTGGTGTACAGAAAGTTGTTTCCCTTGGGATCCCCTCCGAGCACCTTCGAAACACCCCTTTCCACCTGAGGGAGGCTAGCAAAGATTTTCTTTAATTCGTAGGACATATTCGCAGACCTTGTATCCCCTCCgaatgaatggaaaaacaagCCTCCCTTTCTCTTGCGTCCCGTCTACCGGCTCGTCCAGCCTCTCCTGATCGCGCTAACACGGAAGCCTGCGCTGCGCTCCCTCGGCTTGGCTGTGCCCATATATAGTAAACTCGCCCGCGACGCGAACAGCTGTAGTCCTCAGCAGACCTGCGTCAACCTGCCTACCGAGGAAA

Function

symbol description
wdr1 Is expressed in ectoderm; epidermis; nervous system; and solid lens vesicle. Orthologous to human WDR1 (WD repeat domain 1).

NR:

description
PREDICTED: WD repeat-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114209 True 588 lncRNA 0.49 4 12506627 12509143

Neighbor

gene id symbol gene type direction distance location
AMCG00017579 bod1l1 coding downstream 409358 12092470 ~ 12097269 (-)
AMCG00017565 NA coding downstream 532943 11955414 ~ 11973684 (-)
AMCG00017568 cpeb2 coding downstream 568094 11933251 ~ 11938533 (-)
AMCG00017567 LOC108240206 coding downstream 599233 11904838 ~ 11907394 (-)
AMCG00017574 NA coding downstream 655013 11843481 ~ 11851614 (-)
AMCG00017587 drd5 coding upstream 155388 12664531 ~ 12665835 (-)
AMCG00017589 otop1,LOC106583410 coding upstream 161965 12671108 ~ 12677683 (-)
AMCG00017591 NA coding upstream 173283 12682426 ~ 12688515 (-)
AMCG00017588 NA coding upstream 195315 12704458 ~ 12710164 (-)
AMCG00017590 NA coding upstream 220888 12730031 ~ 12739099 (-)
G91553 NA non-coding downstream 6680 12496291 ~ 12499947 (-)
G91539 NA non-coding downstream 164892 12341442 ~ 12341735 (-)
G91467 NA non-coding downstream 672729 11831433 ~ 11833898 (-)
G91466 NA non-coding downstream 676934 11828008 ~ 11829693 (-)
G91381 NA non-coding downstream 1108896 11397520 ~ 11397731 (-)
G91562 wdr1,LOC106565198 non-coding upstream 7937 12517080 ~ 12521214 (-)
G91576 NA non-coding upstream 146926 12656069 ~ 12656333 (-)
G91850 NA non-coding upstream 1534978 14044121 ~ 14044527 (-)
G92006 NA non-coding upstream 2290947 14800090 ~ 14800401 (-)
G92024 NA non-coding upstream 2415250 14924393 ~ 14925960 (-)
AMCG00017582 NA other downstream 184257 12307781 ~ 12322370 (-)
AMCG00017569 NA other downstream 606027 11877360 ~ 11900600 (-)
AMCG00017563 NA other downstream 999807 11504024 ~ 11506820 (-)
AMCG00017556 NA other downstream 2009523 10361300 ~ 10497104 (-)
G91119 NA other downstream 3750720 8755288 ~ 8755907 (-)
AMCG00017631 NA other upstream 1924015 14433158 ~ 14484818 (-)
AMCG00017638 scoc,LOC103463814,LOC103132857 other upstream 2250925 14760068 ~ 14764832 (-)
G92124 LOC101154678 other upstream 3357804 15866947 ~ 15867647 (-)
G92129 NA other upstream 3521259 16030402 ~ 16030905 (-)
AMCG00017663 NA other upstream 4878341 17387484 ~ 17395049 (-)

Expression


Co-expression Network