G91562 (wdr1,LOC106565198)


Basic Information

Item Value
gene id G91562
gene name wdr1,LOC106565198
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 12517080 ~ 12521214 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU114220
CAAGGTTCATAGGTATAGGTGCAGCTGCCACAAATTCAATGTAATTGCCACTTCAGATGCATGCATAACTTTAATATTCtgctttaaatgaaaacactgcacACTTGTCTGCTCTGAAACGGACAAGATTGgtttgaaatgcataaaaagttttttttattatgaaccATTATCACCCATAGGAAAAAATGAGGCAACAAAAAAAGTGAGATACAGGAGCATAGTTATCAGAACAATACAGGATCCGCACTGTGTACACAATATTTCaaatcatataatttatttgcgTTTACCGTTCAAACTTATGATTCTGAATGGTACAGAAATGTTCTGTAGTCACACAACGAGGCAAGAGTTAATCCCATTCCATTTAATGTTAACAAACATCTCTGGTAGAACAGAAGTGAACAGACTACTCTTCAATTGAACCGAGATAAGGCTGTTGCCTCTGGAATGTTGAGCATAGAATTTTTAAAAGCTCCAGAGATCATGTTAAGTGCTTCTTCGTGCAAATAGTTACTGactaaagctttaaaaatacagcatattTAGATATGAACTCCCTGCCATGACTCAGGGTTAACGGTATAGAAACCAGCAGTCATTACAGAAATACTTCGAGAAATGCCATCTTCTACAGTAGTCCTAGTCCCTGAAGATCTGTGCACCTTTTGCGATTAGAATTTGACCGTCCACTGCTTGACACTACAGTCGTGAGAGGCCGTCACGATGGTGTGCTCGTCCAACCATGCCAGTCCACTGACATGATGCAACCGATGGGCACTGGCATCTTCAATCTTTTGTCTGCATCACTGGCTGTCCAGATGAAGACCATCATATCCATGCCCCCACTGGCAAAGTGCTCATTGTCTGGGGACCATGCCAGACACACAACCTTAGCGTGGTGCCCATAGAATACATTCTTTTCCTGGTGGAGGAAAAGGCAAAAATggaagcattacaaaaatgataaaagtttaacattttac
>TU114221
CAAGGTTCATAGGTATAGGTGCAGCTGCCACAAATTCAATGTAATTGCCACTTCAGATGCATGCATAACTTTAATATTCtgctttaaatgaaaacactgcacACTTGTCTGCTCTGAAACGGACAAGATTGgtttgaaatgcataaaaagttttttttattatgaaccATTATCACCCATAGGAAAAAATGAGGCAACAAAAAAAGTGAGATACAGGAGCATAGTTATCAGAACAATACAGGATCCGCACTGTGTACACAATATTTCaaatcatataatttatttgcgTTTACCGTTCAAACTTATGATTCTGAATGGTACAGAAATGTTCTGTAGTCACACAACGAGGCAAGAGTTAATCCCATTCCATTTAATGTTAACAAACATCTCTGGTAGAACAGAAGTGAACAGACTACTCTTCAATTGAACCGAGATAAGGCTGTTGCCTCTGGAATGTTGAGCATAGAATTTTTAAAAGCTCCAGAGATCATGTTAAGTGCTTCTTCGTGCAAATAGTTACTGactaaagctttaaaaatacagcatattTAGATATGAACTCCCTGCCATGACTCAGGGTTAACGGTATAGAAACCAGCAGTCATTACAGAAATACTTCGAGAAATGCCATCTTCTACAGTAGTCCTAGTCCCTGAAGATCTGTGCACCTTTTGCGATTAGAATTTGACCGTCCACTGCTTGACACTACAGTCGTGAGAGGCCGTCACGATGGTGTGCTCGTCCAACCATGCCAGTCCACTGACATGATGCAACCGATGGGCACTGGCATCTTCAATCTTTTGTCTGCATCACTGGCTGTCCAGATGAAGACCATCATATCCATGCCCCCACTGGCAAAGTGCTCATTGTCTGGGGACCATGCCAGACACACAACCTTAGCGTGGTGCCCATAGAATACATTCTTTCTGCATAACCATCAGCCACAGTGAAGACGGTGATGACTTTCTGTGCATCAGAGACCGCAAGGAAGGCCCCATCGTTGGAATACGCCATGTCAGTCACGGCTCCCTTCGCTTCGATGGTCTTCCCATCCTCTTTCAGAGTGTTGCCTTGAATGGAATACAAGTGCACTTTTCCTGCCTGCAAGAAAGCGAGACCTTTTACAAATTACAGCAGGGGTTTTATTTCCGTTACTAAACGTCTCAAGTAGTTGCATCAGTTATTGCATTTCAGCATGACATTAAATAAGCTTTAATAGTTAATTTGTGGTTAACACTTAATATGAACTGCCTAATTGGAACTTACATTATCTCCTACTACCACTGTGGTGCCTCCTGGATGAATAGCTCCAGCTTCTGGCTCATAACCAAGGTTGTCCATTGTAAAGCATTTCTTCTTGTCCTTTAGCAGGACAACCTGTCCAATACAAACAGCCAAAGCATAACCTCTCGGGCCCACTGCTACACACTTCGGCTGAACATCCATCTTCACCAGGTCTGAagcaCTGTATTCCTTCTTGGACAGACTGGTGTAACGGACAGTGTCATCCATACTACAGGTGACCAAGTTGCTCGACTCATCTACAACCATCCTGGAAACAAGATTGCTATGGCCCTTTCCAGAAAAGTCGTCATTCTCTCCCGTCTCTGCATCCCAGATATTAATATGACCATCATGACTTCCAGAGTAGATGTATGATCTTCCATCGCTTTTGTGGACAGTCAGGGATTGAATTGATTTGCTGTGGCcctattaaagaaaataaaaaaaaataaagagttgCATTTAGTTTCTTCAGACAGCGTTTATTAGTGCTGAATGGAGAATTGGTTCACTGCATGCAAG

Function

symbol description
wdr1 Is expressed in ectoderm; epidermis; nervous system; and solid lens vesicle. Orthologous to human WDR1 (WD repeat domain 1).

NR:

description
PREDICTED: WD repeat-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114220 False 989 lncRNA 0.40 2 12520137 12521214
TU114221 True 1806 lncRNA 0.42 6 12517080 12521214

Neighbor

gene id symbol gene type direction distance location
AMCG00017579 bod1l1 coding downstream 419811 12092470 ~ 12097269 (-)
AMCG00017565 NA coding downstream 543396 11955414 ~ 11973684 (-)
AMCG00017568 cpeb2 coding downstream 578547 11933251 ~ 11938533 (-)
AMCG00017567 LOC108240206 coding downstream 609686 11904838 ~ 11907394 (-)
AMCG00017574 NA coding downstream 665466 11843481 ~ 11851614 (-)
AMCG00017587 drd5 coding upstream 143317 12664531 ~ 12665835 (-)
AMCG00017589 otop1,LOC106583410 coding upstream 149894 12671108 ~ 12677683 (-)
AMCG00017591 NA coding upstream 161212 12682426 ~ 12688515 (-)
AMCG00017588 NA coding upstream 183244 12704458 ~ 12710164 (-)
AMCG00017590 NA coding upstream 208817 12730031 ~ 12739099 (-)
G91556 wdr1,LOC107717326,LOC106583413 non-coding downstream 7937 12506627 ~ 12509143 (-)
G91553 NA non-coding downstream 17133 12496291 ~ 12499947 (-)
G91539 NA non-coding downstream 175345 12341442 ~ 12341735 (-)
G91467 NA non-coding downstream 683182 11831433 ~ 11833898 (-)
G91466 NA non-coding downstream 687387 11828008 ~ 11829693 (-)
G91576 NA non-coding upstream 134855 12656069 ~ 12656333 (-)
G91850 NA non-coding upstream 1522907 14044121 ~ 14044527 (-)
G92006 NA non-coding upstream 2278876 14800090 ~ 14800401 (-)
G92024 NA non-coding upstream 2403179 14924393 ~ 14925960 (-)
G92049 NA non-coding upstream 2533249 15054463 ~ 15054684 (-)
AMCG00017582 NA other downstream 194710 12307781 ~ 12322370 (-)
AMCG00017569 NA other downstream 616480 11877360 ~ 11900600 (-)
AMCG00017563 NA other downstream 1010260 11504024 ~ 11506820 (-)
AMCG00017556 NA other downstream 2019976 10361300 ~ 10497104 (-)
G91119 NA other downstream 3761173 8755288 ~ 8755907 (-)
AMCG00017631 NA other upstream 1911944 14433158 ~ 14484818 (-)
AMCG00017638 scoc,LOC103463814,LOC103132857 other upstream 2238854 14760068 ~ 14764832 (-)
G92124 LOC101154678 other upstream 3345733 15866947 ~ 15867647 (-)
G92129 NA other upstream 3509188 16030402 ~ 16030905 (-)
AMCG00017663 NA other upstream 4866270 17387484 ~ 17395049 (-)

Expression


Co-expression Network