G91740


Basic Information

Item Value
gene id G91740
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 13858217 ~ 13913757 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU114438
ttgcattaatgagaaattgaacaggtgttcctaataatcctttaggtgagtgtattgtaGTGATCACACGGTCCTATGATTAACCTATTTTTTGGTGATTGGTTTTTATTATACCCCAATTGTAATAAATAGTTTTCAGTCTAAAGAAATGttacagttgtgttttttttttttaacaagaatatCCCACATTGTCACATTTCTATGATAACAGTGATCAGTTTCCATAGGTTTATTTTACCATAAGgcttttattaattcatatacgataataaaattacatttatatatagaaagCTGCTCTAGGACCTCTTTAAAAGGGTTTCTATGATAGTCTGGTTTAAGTATGTGTGGAATTTCACCTTTTGTGTGTTGATAACATTTTGGCTTtaacaattgtaaaatacagGTAATGAATGCAGAGCACACACTGATGTGAAGAGTAAAACATGGTGTAGAAAAATAGTTTGGGGACTTccattgtgacattttaaaattggtggctcaaacaaaagcacaaaaagcATTGTCCCTGGACCTCAAGACGTGTGAATCCTCTCAGACTAACTATTTCTAGGATAACACTGGCTTTTAATTTTAGATCAACGTGATCATTTCATAACAAAGAAAGAATAGGgatactaaatattttatacGTACAAGCCAGTTGTAATgccctttttacattttccgCGTATGTGCTCTCAAACACAGCACATCTGAATATCATGGGAAAGTTCATCATGCCGACTTAAGCTGGCAGGAACACAAAAATAAGCCACAGGTTTCCCGACATGCCACATGCCCCTCTGCAGCGACCTTCATCCCACATGAATGAACCCATACAGcttattgaataatttattgaATAACTGCTATAGATTCACTTAATTTCAAAGTTGAAACCTATTCAAGTTCAGGTATGATGATGTTGTATCGAGACGCAATATTGTTTAAACAGTGTTTCTGCTAGCTCAATGCTAAAGCTTTGAAAAATACCTTTTCtttagatttattattttcttgtgtgtggGGCGTTTGATAGTTTACTAGTTTGATAGTTTTGTAGTGTGGAATGCAACTCTGACTGATGCATTATAACAGAAAATAACCCAATATAAATTAAGAATAgcttttgtattgttcttattgCTGTTTCAGGAGTTCTATAGTTCTAACAGACATACATAGAAGgtaaatagagtttattttggcatAGACTCGCTTGACTAAGGGACCGGTGACCAGGCCTTGAGGACGAGGCCATCCGAACCCCCCACTGggtggaatgagccaaggagctgcagTGTTTAGGGTGAAGGAGGGATGCAAAGAAATGAATGCTGGAAAAGTGCATTTGTTCTCAGATACTTATGCTTGGTAAGGTGGAAGTCATGCACAAGACTGAGGCCGTCTTCCTTCCGAACTTCAGAATTCAATTTGACactatttcacaaaataatccCTCCATTCCTCTGTTCCTGTATCAGTTGTGCCAAAGGTAAGGCATTTCTGTGATTGATAGGAATAACCCAGAGCATTCCCTTCAGTTTATCTCACTCATAGTCTAAGTCTCACTCATGATTTCAAAATCTCACAACTTGGATAAGAAGTAATACTTCAATGAAAAACAGCCAAAAATATAGCCTTCCTTAATTTGAAAAGTACActtgcaagaaaaaatatagtAAGGTGCTTCTATTCaactttttaaatcatttttaaaaggtaatCTTTCCTTATTATCTTTTTGGCCATTACAATTACACGTTCAGTTGCCCTTCACTTAGTCTCCTCTGCtgcacaattaagcaatttatttGATAAAATCAGCTGTGTTAAATGTAGGTGCTTCACTTCCAAAGTGCCAACTGCTAAAAGGATAGAAAAGCTGATTTATTCTGCAGAAGATGGGTTATGACTGGGACCAGGACCCACACTCAGGAAACACACATAACTGGCCATGCAACTTTAGCTAATCTGTATCCCTGCTGGCTTCCACTGAATCTTCTTAATTCAGACCATGATGATATTGCAAGTCAGGATGTATATTGttaatgttcttgtttgttAGACAGGATGGATGCTAAGTGAAGATTTCTATCCTTGGTATTTAAAAAAGGCGTGCTTGCTTCTTTAGATCATTTCTCTTCCACAGAGCTAAGCGATCAAACTCTTCGATTGTCATTCCAAAGACTTTCCAAAAATCCTCTGGAGACAAATGCctctgaaacacaaaaacaaagagagaaatcacacacaagaaaaactaaattaacctAAACAGTCCTCTGAATATATGTTAAGGTAGAGGGCAGAGACAAAAGGTAAATTTATAGCAATcatctaattttaattttaattccaaatTGGACCAACATTCACTTCCATTTgcttattttctaaaacattaaagtcaatttttatttttatttacaaatgcagaataattatcagaaaatgtattttctactgGAAAGCATGGAAGggattatattataataaatgctCAATATCATGCCAAACTTTTTGATTTTTTATCACAACCATATCTTAGTGAAGTCATAGCTGGCAAGGGTGGTTTAAAAGTGTCAATTAAACCATGGCACACTTTCTTCAATACGTCAGAGCGTTACATTAAACATTCTGATCTGAAAttaatgtcaattaaaaaaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114438 True 2678 lncRNA 0.35 2 13858217 13913757

Neighbor

gene id symbol gene type direction distance location
AMCG00017612 tada2b,LOC107656199,LOC107739399,LOC107653294,LOC107722428 coding upstream 309654 13542461 ~ 13548563 (+)
AMCG00017613 LOC106577489 coding upstream 340050 13501947 ~ 13518167 (+)
AMCG00017611 NA coding upstream 383406 13446501 ~ 13474811 (+)
AMCG00017609 NA coding upstream 429043 13428148 ~ 13429174 (+)
AMCG00017608 NA coding upstream 435771 13419796 ~ 13422446 (+)
AMCG00017619 NA coding downstream 79834 13993591 ~ 14009256 (+)
AMCG00017618 NA coding downstream 155017 14068774 ~ 14084436 (+)
AMCG00017626 gpr78,LOC106608662,LOC105020663 coding downstream 215876 14129633 ~ 14132463 (+)
AMCG00017621 NA coding downstream 221843 14135600 ~ 14151779 (+)
AMCG00017628 NA coding downstream 553833 14467590 ~ 14473360 (+)
G91727 NA non-coding upstream 325007 13528781 ~ 13533210 (+)
G91726 NA non-coding upstream 332068 13522641 ~ 13526149 (+)
G91683 NA non-coding upstream 717339 13140662 ~ 13140878 (+)
G91649 NA non-coding upstream 797571 13059856 ~ 13060646 (+)
G91619 NA non-coding upstream 966861 12865187 ~ 12891356 (+)
G91849 NA non-coding downstream 130327 14044084 ~ 14044528 (+)
G91931 NA non-coding downstream 604475 14518232 ~ 14539104 (+)
G92005 NA non-coding downstream 886334 14800091 ~ 14800376 (+)
G92016 NA non-coding downstream 1029626 14943383 ~ 15036381 (+)
G92038 NA non-coding downstream 1148540 15062297 ~ 15085398 (+)
AMCG00017615 sorcs2,LOC106577493,LOC107590992,LOC107656200,LOC107722411 other upstream 27398 13781266 ~ 13830819 (+)
AMCG00017600 NA other upstream 598457 13196895 ~ 13259760 (+)
G91452 cc2d2a other upstream 1977718 11879614 ~ 11880499 (+)
G91281 LOC103376870 other upstream 4274937 9519773 ~ 9583280 (+)
AMCG00017527 tkfc,LOC107731922,LOC107095500 other upstream 5093314 8751713 ~ 8764903 (+)
AMCG00017620 htra3,LOC106577909 other downstream 111879 14025636 ~ 14039063 (+)
G92046 NA other downstream 1163568 15077325 ~ 15084278 (+)
AMCG00017651 NA other downstream 1174375 15088132 ~ 15090829 (+)
AMCG00017652 NA other downstream 1179434 15093191 ~ 15106835 (+)
AMCG00017650 NA other downstream 1195665 15109422 ~ 15116031 (+)

Expression


Co-expression Network