G92435 (uvssa)


Basic Information

Item Value
gene id G92435
gene name uvssa
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 18461368 ~ 18461702 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU115288
CTTTTTGACCTGCTTAAGGAAGTGGTATCCCAGAGCCAGCttcttgtaggcctctccataACTGTTCTGCCACTCCTGCACCGACTTGATGGCCATGGTCTTGAGCTTCTGGGCTACTTCCCTGGGAGGAGGCAAAGGCTGGTCTGAAGGGTCTGTCTCCACCGTGAGCTCCAGAAACTCCTGGAAGTTGCTGACCAGCAGCGTCCTGAAGTGGTGCGAGCGGGTGAAGAGCTCGCTGGCCATCTGGAAGGCAGACAGGCGGATCTCGGCATGCTCCTGGCTGAGCTGGGTCATGATCAGGTGATAAATATGGTCAATGTATTCATCAGAAGTCC

Function

symbol description
uvssa Predicted to enable RNA polymerase II complex binding activity. Predicted to be involved in protein ubiquitination; response to UV; and transcription-coupled nucleotide-excision repair. Predicted to act upstream of or within DNA repair. Predicted to be active in chromosome. Human ortholog(s) of this gene implicated in UV-sensitive syndrome. Orthologous to human UVSSA (UV stimulated scaffold protein A).

NR:

description
PREDICTED: UV-stimulated scaffold protein A isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU115288 True 335 lncRNA 0.55 1 18461368 18461702

Neighbor

gene id symbol gene type direction distance location
AMCG00017687 zgc:136929,LOC107742495,LOC107665264 coding downstream 192620 18232408 ~ 18268748 (-)
AMCG00017686 NA coding downstream 272015 18181565 ~ 18189353 (-)
AMCG00017688 NA coding downstream 284357 18174151 ~ 18177011 (-)
AMCG00017684 NA coding downstream 519203 17928433 ~ 17942165 (-)
AMCG00017680 NA coding downstream 627551 17825058 ~ 17833817 (-)
AMCG00017694 NA coding upstream 36427 18498129 ~ 18501874 (-)
AMCG00017695 NA coding upstream 265997 18727699 ~ 18737258 (-)
AMCG00017699 NA coding upstream 321028 18782730 ~ 18790340 (-)
AMCG00017698 NA coding upstream 339297 18800999 ~ 18807177 (-)
AMCG00017697 NA coding upstream 361698 18823400 ~ 18828559 (-)
G92434 NA non-coding downstream 1552 18459569 ~ 18459816 (-)
G92428 NA non-coding downstream 8556 18387805 ~ 18452812 (-)
G92401 NA non-coding downstream 356100 18104989 ~ 18105268 (-)
G92386 NA non-coding downstream 570298 17890342 ~ 17891070 (-)
G92375 NA non-coding downstream 605952 17853927 ~ 17855416 (-)
G92440 NA non-coding upstream 20069 18481771 ~ 18482074 (-)
G92441 NA non-coding upstream 21771 18483473 ~ 18483792 (-)
G92442 NA non-coding upstream 23565 18485267 ~ 18486004 (-)
G92443 NA non-coding upstream 27849 18489551 ~ 18490093 (-)
G92444 NA non-coding upstream 30836 18492538 ~ 18493230 (-)
AMCG00017675 NA other downstream 671619 17781648 ~ 17789749 (-)
AMCG00017665 NA other downstream 973871 17468605 ~ 17487497 (-)
AMCG00017663 NA other downstream 1066319 17387484 ~ 17395049 (-)
G92129 NA other downstream 2430463 16030402 ~ 16030905 (-)
G92124 LOC101154678 other downstream 2593721 15866947 ~ 15867647 (-)
G92436 NA other upstream 1082 18462784 ~ 18463176 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other upstream 951285 19412987 ~ 19419356 (-)
AMCG00017725 NA other upstream 1840298 20302000 ~ 20358625 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other upstream 4856391 23318093 ~ 23321954 (-)
AMCG00017819 NA other upstream 5802977 24264679 ~ 24270595 (-)

Expression


Co-expression Network