G92682


Basic Information

Item Value
gene id G92682
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 19905992 ~ 19920152 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU115611
ttgaacattaaaacaacaatgtatCACTCCCATTTACTAATCATATcattctctctcctccccctttCATTACCTCAGATTTGACTTCCCCAGATAACTCAACAAATTTGACTATCCCAACTAACCAACCAAAATCATCaaccacaaaacaaaccacTCTAAATAACTCATCTTCTGATACAACTGTGAATAAATCAAGTCATGACAAGGATGCCCAACGTAACAATAAAGAATATAACAATGCATCTAAAGAGGAGCAACCTGAATCAACAACTAATTCGAAGACATTGTGGGTTATACTGCCTGTCTTGGTTGTGCTGGTGGTTATTGTCATCATAGTTATGAAGTTCAAATGTTTGAAGATCCACTCGGATAACACAGATGAATCAGACAATTGTGCAGAAAAGTGTGCCGGTGCCAAAGGTGTTCAGCTTCTTGGAGTAAAATCCTCTGGAGGTGAAGAAAATGTGGCAGTAAGATGAAATGAAGATCTGAAGATGTTCTCTAACATAAGGGGTCAAACTAAAGCCAGTAGTTTCTTGATTTTTATACAGTGTCTCACAGAAGCTTACTTTTACAACAAAAAAGGACATATAAGAAgagttaaatgtattaacaattaGTAAATGGTACTACTACTGGTACTACTATTTTGCAGGATCTCAGAAATAATTGGACagcattataatgtttaatattttaacttcaagaaacatgttttctgaAAGAAGTAATTTAGATTAAGGGcccattgaaatacaaaatgtttgtgTTCCGAATCGGTCGCAGAGGCATTCATGGCATCAATGCACATTGATTATGCCTAACTAAACTTTCATGGTATAAAATCTGAAACGATCCATAATGTTTCACATACCAATGCTGTGGGAGTGGTCACATTCTGGAACTATGACTTATTCTGTTGGAGACTGAAGCACTTAATAAgcacttaaaataatgtatttggtCTAAGGTAACTGGCagatattttgaagaaaatcTTGGTATTTATTGGTGAAGTTTTGAAGTTGGGATATGCCAATGttcaatttttaatacaaatgtttcaaatCAACTAGACTGATGTCTAACTAAGAAAGTTTTTCAGGTTTgagctgaataaataaatgtaatcaaatactTCTGTGAGGCACTGTACCCATGAAAGCATTCCTATATATTCTTCAGTTGTCAGGCAACTAATTCATACTAacatatcaaatatttatactgtatagTGTTGTGCACTGAGCTCTGTACTGGATGCTCAAATACCCCCTGAAGCACCCATCTgaagttttgtattgttttaagatAACTGTATAaaagtgtatacatttttttttgttcttttcatgttttagttCTTTTCAATAAGCAGTTTTTTACCATATCAGGTTCAATCATTCtctataattgtaatttgcTTGACCACGCTATTGGTATTGTATTGTtgaatgcattcatatttaatggaGTTGACTGGCAAGTAAATAAATCTTTCTGAATCATGTTGGGCTAAGAGTAATCTGTA

Function

GO:

id name namespace
GO:0035162 embryonic hemopoiesis biological_process
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU115611 True 1534 lncRNA 0.34 8 19905992 19920152

Neighbor

gene id symbol gene type direction distance location
AMCG00017724 ddit4l coding downstream 15463 19888936 ~ 19890529 (-)
AMCG00017728 NA coding downstream 36535 19868999 ~ 19869457 (-)
AMCG00017720 NA coding downstream 95864 19696553 ~ 19810128 (-)
AMCG00017716 rpl34,LOC107566275 coding downstream 246464 19656933 ~ 19659528 (-)
AMCG00017715 ostc,LOC106609071,LOC106577458 coding downstream 251312 19651516 ~ 19654680 (-)
AMCG00017727 ppp3ca coding upstream 28040 19948192 ~ 19954812 (-)
AMCG00017726 LOC102788851,LOC106608629 coding upstream 53266 19973418 ~ 19986615 (-)
AMCG00017731 nfib,LOC106608626 coding upstream 473725 20393877 ~ 20408258 (-)
AMCG00017729 NA coding upstream 538063 20458215 ~ 20482752 (-)
AMCG00017736 tmod1,LOC102782831 coding upstream 578115 20498267 ~ 20514665 (-)
G92660 NA non-coding downstream 38356 19867418 ~ 19867636 (-)
G92657 NA non-coding downstream 39575 19865972 ~ 19866417 (-)
G92609 NA non-coding downstream 288205 19613241 ~ 19617787 (-)
G92608 NA non-coding downstream 292810 19612705 ~ 19613182 (-)
G92541 NA non-coding downstream 779643 19126060 ~ 19126349 (-)
G92714 NA non-coding upstream 495154 20415306 ~ 20415612 (-)
G92798 NA non-coding upstream 703991 20624143 ~ 20624420 (-)
G92800 NA non-coding upstream 714520 20634672 ~ 20634880 (-)
G92822 NA non-coding upstream 751913 20672065 ~ 20676278 (-)
G92823 NA non-coding upstream 756507 20676659 ~ 20734422 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 486636 19412987 ~ 19419356 (-)
G92436 NA other downstream 1442816 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 2116243 17781648 ~ 17789749 (-)
AMCG00017665 NA other downstream 2418495 17468605 ~ 17487497 (-)
AMCG00017663 NA other downstream 2510943 17387484 ~ 17395049 (-)
AMCG00017725 NA other upstream 381848 20302000 ~ 20358625 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other upstream 3397941 23318093 ~ 23321954 (-)
AMCG00017819 NA other upstream 4344527 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 5025943 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 5077392 24997544 ~ 25018212 (-)

Expression


Co-expression Network