G92947


Basic Information

Item Value
gene id G92947
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 22044980 ~ 22124742 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU115945
caccatgtcacaaaggtcgaatcatttcaaattggtttcttgaacatgacaattcagtacagtacagttcactgtactaaactggcccccacagtcaccagatctcaacccaatagagcatctttgggatgtggtggaacgggagattcgtgccctggatgtgcatcccacaaatctccatcaactgcaagatgctatcctatcaatatgggccaacatttctaaagaatgctttcagcaccttgttgaatcaatgccacgtagaattaaggcagttctgaaggcgaaagggggtcaaacacagtattagtatggtgttcctaataatcctttaggtgagtgtatgtGACTGTACATGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU115945 True 359 lncRNA 0.43 2 22044980 22124742

Neighbor

gene id symbol gene type direction distance location
AMCG00017757 ptprd,LOC103370113 coding downstream 641720 21399301 ~ 21403260 (-)
AMCG00017758 ptprd,LOC106577623 coding downstream 675491 21316467 ~ 21369489 (-)
AMCG00017759 NA coding downstream 740857 21296047 ~ 21304123 (-)
AMCG00017753 NA coding downstream 908420 21129357 ~ 21136560 (-)
AMCG00017752 LOC107591574,LOC106602091,LOC107750449,LOC101068444 coding downstream 1131024 20881493 ~ 20913956 (-)
AMCG00017763 NA coding upstream 184507 22309249 ~ 22366047 (-)
AMCG00017776 NA coding upstream 1044831 23169573 ~ 23194544 (-)
AMCG00017777 gtf2e2,LOC107671915,LOC107548363 coding upstream 1139292 23264034 ~ 23279042 (-)
AMCG00017782 aco1 coding upstream 1171946 23296688 ~ 23313459 (-)
AMCG00017781 acer2,LOC107691831,LOC107675399,LOC107601172,LOC107559953 coding upstream 1206202 23330944 ~ 23345917 (-)
G92943 NA non-coding downstream 70691 21973984 ~ 21974289 (-)
G92892 NA non-coding downstream 915981 21128471 ~ 21128999 (-)
G92836 NA non-coding downstream 1222020 20817675 ~ 20822960 (-)
G92838 NA non-coding downstream 1222985 20820466 ~ 20821995 (-)
G92823 NA non-coding downstream 1310558 20676659 ~ 20734422 (-)
G92953 NA non-coding upstream 27630 22152372 ~ 22152578 (-)
G92955 LOC101154678 non-coding upstream 95779 22220521 ~ 22220780 (-)
G92972 NA non-coding upstream 148239 22272981 ~ 22274977 (-)
G93024 NA non-coding upstream 561682 22686424 ~ 22689677 (-)
G93026 NA non-coding upstream 565933 22690675 ~ 22691532 (-)
AMCG00017725 NA other downstream 1686355 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 2625624 19412987 ~ 19419356 (-)
G92436 NA other downstream 3581804 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 4255231 17781648 ~ 17789749 (-)
AMCG00017665 NA other downstream 4557483 17468605 ~ 17487497 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other upstream 1193351 23318093 ~ 23321954 (-)
AMCG00017819 NA other upstream 2139937 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 2821353 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 2872802 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 3820399 25945141 ~ 25957648 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G288563 NA non-coding CI01000074 null 677302 ~ 678239 (-)
rainbow trout (Oncorhynchus mykiss) G288593 NA non-coding NC_048567.1 CM023221.2 66857550 ~ 66857820 (+)