G92948 (LOC107575789)


Basic Information

Item Value
gene id G92948
gene name LOC107575789
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 22092965 ~ 22093405 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU115948
cAGGGGGATGTTGcaggcgctgcaggatttcagtccttcatggcgtagtgtgttaccaattgttttcttggtgactatggtcccagctgccttgagatcattaacaagatcctcccgtgtagttctgggctgattcctcaccgttctcatgatcattgaaactccacgagggagactgacagttattttgtgtttcttccatttgcgaataatcgcaccaactgttgtcaccttctcaccaagctgcttggcgatggtcttgtagcccattccagccttgtgtaggtctacaatcttgtccctgacatccttggacagctctttggtcttggccatggtggagagtttggaatctgattgattgattgcttctgtggacaggtgtcttttatacaggtaatgagctgagat

Function

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase zeta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU115948 True 411 lncRNA 0.47 2 22092965 22093405

Neighbor

gene id symbol gene type direction distance location
AMCG00017757 ptprd,LOC103370113 coding downstream 689705 21399301 ~ 21403260 (-)
AMCG00017758 ptprd,LOC106577623 coding downstream 723476 21316467 ~ 21369489 (-)
AMCG00017759 NA coding downstream 788842 21296047 ~ 21304123 (-)
AMCG00017753 NA coding downstream 956405 21129357 ~ 21136560 (-)
AMCG00017752 LOC107591574,LOC106602091,LOC107750449,LOC101068444 coding downstream 1179009 20881493 ~ 20913956 (-)
AMCG00017763 NA coding upstream 215844 22309249 ~ 22366047 (-)
AMCG00017776 NA coding upstream 1076168 23169573 ~ 23194544 (-)
AMCG00017777 gtf2e2,LOC107671915,LOC107548363 coding upstream 1170629 23264034 ~ 23279042 (-)
AMCG00017782 aco1 coding upstream 1203283 23296688 ~ 23313459 (-)
AMCG00017781 acer2,LOC107691831,LOC107675399,LOC107601172,LOC107559953 coding upstream 1237539 23330944 ~ 23345917 (-)
G92943 NA non-coding downstream 118676 21973984 ~ 21974289 (-)
G92892 NA non-coding downstream 963966 21128471 ~ 21128999 (-)
G92836 NA non-coding downstream 1270005 20817675 ~ 20822960 (-)
G92838 NA non-coding downstream 1270970 20820466 ~ 20821995 (-)
G92823 NA non-coding downstream 1358543 20676659 ~ 20734422 (-)
G92953 NA non-coding upstream 58967 22152372 ~ 22152578 (-)
G92955 LOC101154678 non-coding upstream 127116 22220521 ~ 22220780 (-)
G92972 NA non-coding upstream 179576 22272981 ~ 22274977 (-)
G93024 NA non-coding upstream 593019 22686424 ~ 22689677 (-)
G93026 NA non-coding upstream 597270 22690675 ~ 22691532 (-)
AMCG00017725 NA other downstream 1734340 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 2673609 19412987 ~ 19419356 (-)
G92436 NA other downstream 3629789 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 4303216 17781648 ~ 17789749 (-)
AMCG00017665 NA other downstream 4605468 17468605 ~ 17487497 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other upstream 1224688 23318093 ~ 23321954 (-)
AMCG00017819 NA other upstream 2171274 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 2852690 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 2904139 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 3851736 25945141 ~ 25957648 (-)

Expression


Co-expression Network