G92972


Basic Information

Item Value
gene id G92972
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 22272981 ~ 22274977 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU115974
gagaaactgaaaatgtacatttcaaattaagtgaTTTTGAAAAATCATAATTGGCTATTATTGGTTTTCctatattaagattttattacaaatatatattagcatccataaaaacaaataggaaaAGATTTAGATTTGCTTAAATTCAGGTCAATGGTTTGTAATATGAAACACAGGTCCGCTGAGCAGTAGCTTTTAAATCACATCATACAAGTATAAGACTTAAATTATATGAGTTTTCCATTTCCGAGTCACACGTGATAAAAATgcttcacaaaataattaattcatatattatttattgtttaaaacaaaattattgttaataaacaaaaaggttttacattgaaaatcaagtaataaattaatgacaaaAGGATTACAAAGGAATAACACAGCATTTTCAAGTCTCAACCATGTACAAtataaaatgtaagatATTCATCTGTTATTCCggaagaaagaaacaagaaaattactttgaaatatttatgttttcttttttgtatctTTGTCAAGACGTCTCATATAAATAGCTCTGTTCATGTGTAATAGCAAAAATACTTCAATATTATTGGGAGACGTTTTAAACAGTAAATTCCTGAATCATGTCCATTTTACATTCTACTATTTATGAATTACTTAAAGTTGAGTAAACTAACCATTTCAGCTCTCTGTTACAGTTGTCCATACAAAACCTCtttattgaaaaggaaaaatagcTCTCATTTACCTCTAGGAATCATGCAGTAAGTCACAGTTCTCTGTGCACAGTAAATATGATCATGTAAACTTGATCATGTAATCATGTATATCCATTTGTTACATTAAAACCAATTCCCATTACAAAAGATTTGacttattttaacaacaatgttgtttaaaatcaaactaGTAAATTGTACTTtggtgcaaatgttttaaatctagAGGCCCTTACTTCCCACTCGATTGAGATCAACTGTAGAATACCAAGATATCCCCAATAAGGCCCTTACTGTCCATTTCCAAAGGTAGATGTCATCATTGccaaaattatcattttaaacttACAGACAAATATAGTTTccatcaattaaataataaaggaacTGGTCAGGTCCTATATAATATGCTGATTTAAAGCAACACTATGAGCAGAAAAATTATATACCAAAGATATAGAAGGATCACAGTAGGCTTTGGAAAGACAAACCATCAGacaatatattctatatataggtttttttttggcCAAGGTCTGGGGTACTGAATATGAACCACAGGGGCTCCAGGGTCAGTAACTGCAGTCACTAAAAGACTGTTCATACTCAGATCACAATCCATTGTGCTTTCtttgacaaaacacaaaacctgtGATAGTGCCATAACATTGCGgttttaatttagcaaaaacaacaacaataaggaATTATTTATTCGTTTGGTTATATTTTCAACACTGGACACTGGTCTGGTAAGGCCTAGACTGGGACATTTATAGCAAACACAGATGACAAAACCAAGatgaaatgtattacacattGAACGTCCTCTGGCTCCCTGTAGCTTCCATTATCCAAAGCAGTAGTATTCGTCCGAATCCCTCTTAATGTCTTTATGCAATGGAGCTTTATCAAGACCATCTTCAATGATGGGCCCATCAGGAAAGTGCTCCAGGTCTGTTGGGGAGGTGTGGCCCGGATCATCCTCGGCCAAGGTGTCCAGGTAACTGCCGACGGAAATCCCGTCCAGGCCATCGCAGCCATCATGCAGGCTGTCACAGCTGCCCCGCAGAGAGGTGTCCTGGCTCTCCGACAGACTGTACAAACTGCCCGCCAGGCTGCCCTCTCTACTCGCCATGGTGCCCTTCTCATCTATTACCCATTTGATTGACTCGATGCCATCATTAATAGACAGTAACTGCTGCATCAGTTTAACGTCAATGGCA

Function

GO: NA

KEGG:

id description
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU115974 True 1930 lncRNA 0.35 2 22272981 22274977

Neighbor

gene id symbol gene type direction distance location
AMCG00017757 ptprd,LOC103370113 coding downstream 869721 21399301 ~ 21403260 (-)
AMCG00017758 ptprd,LOC106577623 coding downstream 903492 21316467 ~ 21369489 (-)
AMCG00017759 NA coding downstream 968858 21296047 ~ 21304123 (-)
AMCG00017753 NA coding downstream 1136421 21129357 ~ 21136560 (-)
AMCG00017752 LOC107591574,LOC106602091,LOC107750449,LOC101068444 coding downstream 1359025 20881493 ~ 20913956 (-)
AMCG00017763 NA coding upstream 34272 22309249 ~ 22366047 (-)
AMCG00017776 NA coding upstream 894596 23169573 ~ 23194544 (-)
AMCG00017777 gtf2e2,LOC107671915,LOC107548363 coding upstream 989057 23264034 ~ 23279042 (-)
AMCG00017782 aco1 coding upstream 1021711 23296688 ~ 23313459 (-)
AMCG00017781 acer2,LOC107691831,LOC107675399,LOC107601172,LOC107559953 coding upstream 1055967 23330944 ~ 23345917 (-)
G92955 LOC101154678 non-coding downstream 52201 22220521 ~ 22220780 (-)
G92953 NA non-coding downstream 120403 22152372 ~ 22152578 (-)
G92947 NA non-coding downstream 148239 22044980 ~ 22124742 (-)
G92948 LOC107575789 non-coding downstream 179576 22092965 ~ 22093405 (-)
G92943 NA non-coding downstream 298692 21973984 ~ 21974289 (-)
G93024 NA non-coding upstream 411447 22686424 ~ 22689677 (-)
G93026 NA non-coding upstream 415698 22690675 ~ 22691532 (-)
G93028 NA non-coding upstream 502827 22777804 ~ 22778099 (-)
G93033 NA non-coding upstream 526394 22801371 ~ 22804384 (-)
G93038 NA non-coding upstream 564174 22839151 ~ 22839434 (-)
AMCG00017725 NA other downstream 1914356 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 2853625 19412987 ~ 19419356 (-)
G92436 NA other downstream 3809805 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 4483232 17781648 ~ 17789749 (-)
AMCG00017665 NA other downstream 4785484 17468605 ~ 17487497 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other upstream 1043116 23318093 ~ 23321954 (-)
AMCG00017819 NA other upstream 1989702 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 2671118 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 2722567 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 3670164 25945141 ~ 25957648 (-)

Expression


Co-expression Network