G93033


Basic Information

Item Value
gene id G93033
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 22801371 ~ 22804384 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU116062
ataatctagtgtctattaacatgtgtcaatttcagactaaacagttaaacaggactgagaagatatttctcggcattgacagattttattacTATAATTCGGTTTCaacccccagtgtcctattggagggggctggatttatgactgatgtcaatccatgtcatcttttggaaatgccggttggcccgggttcgtagctctgttttgggatttcggctctcgcccgcttcaaagggtttttattacctccaggccctattccccagacatttcacagcagcgATTCCAAGGCATTttgcccattctcggtgccatcctcccaagagcGCCACtttgataactttgggggagaggtcttcttagatcagagcttcagctccaaatgctcttatcaaaatacacccccatTTAACGCTACATATTCAAACTTGGTTCAGATTTTTGCatgacattggaatatagcattgttCTCCTGTGTAGCACAAGCCTGTTTGCACCTCACAATTTCAGCTGCACCACTCCACACTGTGCTATTATCCCCACTGTTTCAACATAGTTTTGCGtagttattggatgaatgtgATGCATTAATATCGCACAAAAACTGGTTATTCACTCTAAGGCTTTCAACACAATTCAAATTCATTTGCGCTATGCGCTTGTGTATTGTcagcacagaaaacatttgcatctcatgttttcaattactgagtcattaccatatgttaataagccatgacattaaaggaacaggactctacatattgaattgatgatcattagcacctgtttggtataattgtttaatcaaacacctgactatatgcctacaaaacccctgactttgtgcaagtgtacctagaagaattgatgatgttttgaaggcaaagggtggtcacaccaaatatggatttgatgtagatttttcttctgttcagtcactttacatttagttaattgataaataaatctattaacatgtctatttttgatagcattcttactttacagcatttattcacacctgcttaaatcttttgcacagtactgtatgtatttaattatagcttcttggttcattttttttctcagactCACTATTTGTCCCACTTATTAAATATCCTCATTATTTCCAAAGGTTTGCAGGGCTTTATAACCCCTAACAGGAGTTAAGAGACTATAGGGCTGCACAACCAATTAGTGAACTGCACAATTATGCCTTGATTTACGGAGCTGCTTTTTAATTAGAAGAATAATTTTCAAAGTTTTCAAAAATCTAACCTGCACATGATTTCAGAAGTGCTGAGATAATCATcctgatattttattaattaccaAGAAAATaccaaaactgaaatacaataatactagtgatatatctatatgtgtatatatgaatgggagttatgtatttctttattaggAAAAACTTAAATTTGTACTTTGAAAACCAGAGCCCTGGTAGAACCTGCTTGATTTAACCTCAGTTTTTACAGTCaatgtcaaatatttattttaatggtagatATTTGTCAGGATGTCATAGAGACATGAAATACCAAATGTAAAGggatgttgtgtttttaaatgcaaaacaatagcATTACCATGGTATTCGTACAATGGTTAAAAGTTAATGTTTTGAAACAGATTACATAATCTGAtgaatgataggttgcgaatgtaACCCCGGTTAtcagaaaaaggaagcactgcccaaggaggaggggtttCTGAGATCGAAAACGTcgctctatcaaagctgccattggcccctgcgcacctcactcaaaacaggtcccttcccacttcctgttttataaaacgtgacgtctgcgtGGGTTTGTCATCTTTTGccacccttgggcagtgcttcctttgtcagataaccggggttgcgtTCACAAAGGAAGCATATCATGCACCACCATGTAACACAGGatcagttgtcacctattagcacagctaatgcaggacaacagcaggctctaccatgacaatcaaaccataaacattgcggAGCATTGGccacttgctccactagcccagatAGGAGTGAgaccacaccagctctacaatatgtagccagaaatcttgctgattgataggggatcaaatacttatttccctcattaacatgcaaatcaatttataacttttttgaaatgcatttttctggattttgttgttattctgtctctcactgttaaaatacacctaccattaaaattatagactgatcatttctttgtcagtgggcaaatgtacaaaatcagcaggggatcaaatacttttttccctcactgtatacacacagggcgcaggaaccaactcatgcaccacacatggaacacaggagcagttgacgcctgctgattagGCCAGCTAATGCAGGGCACTATTGTGTtaacaaatgaactatgtacacagcagagTATAAGAGCCATGTACAAGTACAAGTGCTTACCATGCATCTAACACACTGTTCATGCActttggaaaaagtgtgtgggcATTGCGACAGGCTGAAGGAGAGAATAGCAAACTTGAATGCTCGGCCCTCATAGGCAAAGcagaggaacttcctgtgtacctgcgcaatagggatgtgaaagtaagtgaTTGATGGCAGTTGCAGGagcgggctgtagtgcaggctcaagccggcagaggagcacctcTCGTGGGTTTTATTGCtgctgctagcactcctgctgtggaggaaaaaaacaacacagcaagcaatcggataatatatggcactatattaacatgattattattttgaaatgctctatttgtgaaccaaaactgaaaccgaaagtgcagCTAGAGCTCCAGTTATCTGACAGACAGAATctaaattagctataaatataactaataagatacacaatagagacagagatgtagcaaaacggtggtgaacaacactattagtgaagccagccagccgaaatatgcagtttttaatgtctaatgcaacacacagtcacagaaagctcacgttctcg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116062 True 3014 lncRNA 0.39 1 22801371 22804384

Neighbor

gene id symbol gene type direction distance location
AMCG00017763 NA coding downstream 435324 22309249 ~ 22366047 (-)
AMCG00017757 ptprd,LOC103370113 coding downstream 1398111 21399301 ~ 21403260 (-)
AMCG00017758 ptprd,LOC106577623 coding downstream 1431882 21316467 ~ 21369489 (-)
AMCG00017759 NA coding downstream 1497248 21296047 ~ 21304123 (-)
AMCG00017753 NA coding downstream 1664811 21129357 ~ 21136560 (-)
AMCG00017776 NA coding upstream 365189 23169573 ~ 23194544 (-)
AMCG00017777 gtf2e2,LOC107671915,LOC107548363 coding upstream 459650 23264034 ~ 23279042 (-)
AMCG00017782 aco1 coding upstream 492304 23296688 ~ 23313459 (-)
AMCG00017781 acer2,LOC107691831,LOC107675399,LOC107601172,LOC107559953 coding upstream 526560 23330944 ~ 23345917 (-)
AMCG00017787 NA coding upstream 551222 23355606 ~ 23388495 (-)
G93028 NA non-coding downstream 23272 22777804 ~ 22778099 (-)
G93026 NA non-coding downstream 109839 22690675 ~ 22691532 (-)
G93024 NA non-coding downstream 111694 22686424 ~ 22689677 (-)
G92972 NA non-coding downstream 526394 22272981 ~ 22274977 (-)
G92955 LOC101154678 non-coding downstream 580591 22220521 ~ 22220780 (-)
G93038 NA non-coding upstream 34767 22839151 ~ 22839434 (-)
G93090 NA non-coding upstream 485948 23290332 ~ 23290681 (-)
G93092 NA non-coding upstream 490435 23294819 ~ 23295369 (-)
G93159 NA non-coding upstream 491416 23295800 ~ 23296246 (-)
G93165 NA non-coding upstream 522141 23326525 ~ 23329744 (-)
AMCG00017725 NA other downstream 2442746 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 3382015 19412987 ~ 19419356 (-)
G92436 NA other downstream 4338195 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 5011622 17781648 ~ 17789749 (-)
AMCG00017665 NA other downstream 5313874 17468605 ~ 17487497 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other upstream 513709 23318093 ~ 23321954 (-)
AMCG00017819 NA other upstream 1460295 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 2141711 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 2193160 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 3140757 25945141 ~ 25957648 (-)

Expression


Co-expression Network