G93100 (cj011,LOC106577738)


Basic Information

Item Value
gene id G93100
gene name cj011,LOC106577738
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23320451 ~ 23321055 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU116140
ACGTTTGGGAATTTCCTTCTGATCTCTTCCACAAAAATTGGTaggtttttgattttgttcttgttgatCCAGACCGTTGTGACACTGGGCATGTATGGAAACTTCACGTGAGAGGTGTAGTTGTTGCAGTCTAGAATCAGGGTGGTGAGCTTCTCCAGTTCCCCCAGAAGAGCTGGACTCTCTTCCAACAGGTTGAAGCTGAGGTCCAGCACCTCCAGGACTTCCCGGTGTTGGAAAATGGTGCTGTAGGGGATCTCCACCAGGTTCTGGTAAGCGAAGGAGAGATGCCGTAACCCCAACATGTAGGAG
>TU116141
ACGTTTGGGAATTTCCTTCTGATCTCTTCCACAAAAATTGGTaggtttttgattttgttcttgttgatCCAGACCGTTGTGACACTGGGCATGTATGGAAACTTCACGTGAGAGGTGTAGTTGTTGCAGTCTAGAATCAGGGTGGTGAGCTTCTCCAGTTCCCCCAGAAGAGCTGGACTTCTTCCAACAGGTTGAAGCTGAGGTCCAGCACCTCCAGGACTTCCCGGTGTTGGAAAATGGTGCTGTAGGGGATCTCCACCAGGTTCTGGTAAGCGAAGGAGAGATGCCGTAACCCCAACATGTAGGAG
>TU116142
ACGTTTGGGAATTTCCTTCTGATCTCTTCCACAAAAATTGGTaggtttttgattttgttcttgttgatCCAGACCGTTGTGACACTGGGCATGTATGGAAACTTCACGTGAGAGGTGTAGTTGTTGCAGTCTAGAATCAGGGTGGTGAGCTTCTCCAGTTCCCCCAGAAGAGCTGGACTCCTCTTCCAACAGGTTGAAGCTGAGGTCCAGCACCTCCAGGACTTCCCGGTGTTGGAAAATGGTGCTGTAGGGGATCTCCACCAGGTTCTGGTAAGCGAAGGAGAGATGCCGTAACCCCAACATGTAGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116140 False 309 lncRNA 0.49 2 23320451 23321055
TU116141 False 308 lncRNA 0.49 2 23320451 23321055
TU116142 True 310 lncRNA 0.49 2 23320451 23321055

Neighbor

gene id symbol gene type direction distance location
AMCG00017786 NA coding upstream 23804 23295493 ~ 23296647 (+)
AMCG00017771 NA coding upstream 31096 23279749 ~ 23289355 (+)
AMCG00017770 NA coding upstream 44281 23271599 ~ 23276170 (+)
AMCG00017775 rbpms,LOC107377421,LOC106526281,LOC107086924 coding upstream 70604 23227857 ~ 23249847 (+)
AMCG00017778 LOC103387471 coding upstream 105091 23213411 ~ 23215360 (+)
AMCG00017785 rps6,LOC106609995,LOC106602804 coding downstream 27303 23348358 ~ 23352278 (+)
AMCG00017784 NA coding downstream 118691 23439746 ~ 23443917 (+)
AMCG00017794 LOC103353869,LOC108275199,LOC100699015,LOC101470794 coding downstream 289183 23610238 ~ 23615963 (+)
AMCG00017793 NA coding downstream 306846 23627901 ~ 23632668 (+)
AMCG00017798 NA coding downstream 327153 23648208 ~ 23671667 (+)
G93039 NA non-coding upstream 441983 22878078 ~ 22878468 (+)
G93027 NA non-coding upstream 542348 22777728 ~ 22778103 (+)
G92956 NA non-coding upstream 1088559 22231457 ~ 22231892 (+)
G92954 LOC101154678 non-coding upstream 1099672 22220524 ~ 22220779 (+)
G92952 NA non-coding upstream 1167871 22152321 ~ 22152580 (+)
G93101 NA non-coding downstream 9435 23330490 ~ 23330720 (+)
G93102 NA non-coding downstream 9679 23330734 ~ 23330972 (+)
G93125 NA non-coding downstream 106677 23427732 ~ 23429155 (+)
G93131 NA non-coding downstream 120354 23441409 ~ 23441770 (+)
G93207 LOC107571907,LOC107703852,LOC108427439 non-coding downstream 354195 23675250 ~ 23675551 (+)
AMCG00017745 NA other upstream 2469834 20848356 ~ 20850617 (+)
AMCG00017747 NA other upstream 2498403 20799595 ~ 20822048 (+)
AMCG00017730 ppp3ca,LOC107084148,LOC106922390,LOC106958666,LOC102788851 other upstream 3317322 19993085 ~ 20003129 (+)
AMCG00017712 NA other upstream 3792158 19444172 ~ 19528293 (+)
AMCG00017710 nans,LOC108241509,LOC103384124,LOC107390934,LOC107390917 other upstream 3887348 19396028 ~ 19433103 (+)
AMCG00017817 phox2b,LOC101065912,LOC106604546 other downstream 787505 24108560 ~ 24112110 (+)
AMCG00017829 smim14,LOC107700293,LOC107757606 other downstream 1384215 24705270 ~ 24715730 (+)
AMCG00017843 NA other downstream 1729254 25050309 ~ 25052374 (+)
AMCG00017886 NA other downstream 3671836 26992891 ~ 26997452 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other downstream 4151826 27472881 ~ 27697379 (+)

Expression


Co-expression Network