G93165


Basic Information

Item Value
gene id G93165
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23326525 ~ 23329744 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU116222
GCCCTTGTTCCCAGAGTCTTGCTTCTGAAAGGGAACCCCAGCCGTCAGGACATTGAATATGTTGTGTAGATAGTATGTCTGCAAACAAGTTAGTACATCTTTGAAGTTTTCATTCAAAAATCttggggaaaatacatttaaaatgtcagcaaCATCTGTAGCCACAAGATGGCACTAAAGGTATCAACATGCCTTTTTATTGGGATTGTCTTTTCAATAGACTTCTAAAGAACAGCATAGAGTTCAAAGGATTTTAATATCAAGAAACTAATACGTTTTTCTAACCActattttctttcccctcaGCATCAATCCTCCACcgtgtttatacatttacagaatAATTTAAGCATAGCAATTGCTCACATGACTAAAGGGagtttattacaattataaaactaaataacttTATAAACAAATCCTTAAAGTTGATGGAACATTAAAACCAATCCACAATATTATATTGCAGCATTAAGACAGCTTAGGGCACATTTTAGGGCACATTGTGGGGAACATTGATTCTGGCACTAAATGCttggttataaaaaataaaaaaaaagtaccaaTCCCCGCTATGCCTTACCCCATTTCACTCGAACGGTTTGGTTTAGTTACTCCTAAAATGTACCTAGATTGTGTAAATAAGATATTCAGTTTTAGTACTGGAAGTGTATACATCCTTGACAGTTTTAGAACTTGTATCAACTGCTTTTAACAGACACCTTTCCTATAAATGAAAAGCACCCTTCAAACAGTGCTTGGTCAAtataaatttattttatgtgcatCAACAAATACCGAGTAATAGGAAATATTTACATCCACCAGCAAGTAAAAGTACCTGGTCAGTTCAAATAAAACTTAACCTTCttatattactttgttttccagaatttaataaaatttgtatttcagtGCTTTTTCACAGAGTTTGGAAATCAGTATTATTGCACAGCATTAGAAtagttagaaaaataataaaatacaaagactCGTGCAAATGAGTAACATTAATAACAGAAGGATGAATAAAGTGAAAAgtataaagtacagaaaaaaaatctgtacgtTTTGATTGAAGCTTATAATGGCATGTCAGTCTTCACAGTATGAATCAAGGCATATCCTTTCCCACACTCTGGCCCTGTGCTCCGGCTGCAGACAGAGGCTAATGACGTCACTGGTCTGCTGGACTCTCCTCTGGAATCTGTCCTGCTCTCTTCCCATCCTGCAGGGGGCAGCTGTCCTCCTCCTCTGACTTTCTCAGAGGAGTCCCCGGTCCTTCTTTGTCCACAGGAGGCTCATCCTTGGTTTCCGTCACCTTTCCAGCCAGAGCCTCAAATGCAAAGGGGTTGTAGGGGTCGTCACTGTGCAGGAACAGTTCCCAGagctctgtgctgctctgtggtCCCTCACAGCTCCCTTCTGAATCATCTTCCCAGTCCTCGTCCTCTGACCAGTCCGTCTCACCTTCCTCGTCcatttcctcctcttcctcctcctccaatgGTCTCTGCCTGGAGGAGCAGCTCACCGCCTTGAATGAATCCGAGTCTTTGCCAGCCAGGGAAAAACTGGCATCGGGAGCAGAGTCCAAGAGGTCATCCCAGGTGCAGTCCAAATCACTGTCCGCCTCTGCATCTTCACAACCACCATGTGATTCCAGATCTTCTGAATCCCATTCGAACCAGTCAGACATCTCCACCTGCACCTCCATCTCACCTGACACCAGTCCCCAAAGACTCTCTACCTTAACCATCTGCATTTCCTGGACAGTGGGCCAATTTTCACACCCTGGAGTGTCTTTCCTCTGCTTTTCACAGGACCCCATTAAAAAACTGGTCATCCCAGAGGgagtgtgggggaggggggagtcTTTCCCAGCCATGGGGACTTTGGTTCGAACGGACTCAGTGGCAATGGGCCAGTGGCTCAGCATTTTAGAAAACGCTCCCAGAAGGAAGCAGACGGCTCGCCAAAACACCTGGAACAGTGGCAGTCCCGCAAGGTCCGTCTCGCACTTGTTCCCAGGGAGGTGCCGCTGTGTCACAGGCCCGTGGGAAAGCGGGGCACTGGCCTTACTGAAACCCACACTTGGCATCATGTATTTCAATGGGCACAGGTAAGCGACTGGGCAGTAGCAATGGGCAGCGTCAGGGGCCATTCTGTCTCCACCTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116222 True 2179 lncRNA 0.44 2 23326525 23329744

Neighbor

gene id symbol gene type direction distance location
AMCG00017782 aco1 coding downstream 13066 23296688 ~ 23313459 (-)
AMCG00017777 gtf2e2,LOC107671915,LOC107548363 coding downstream 47483 23264034 ~ 23279042 (-)
AMCG00017776 NA coding downstream 131981 23169573 ~ 23194544 (-)
AMCG00017763 NA coding downstream 960478 22309249 ~ 22366047 (-)
AMCG00017757 ptprd,LOC103370113 coding downstream 1923265 21399301 ~ 21403260 (-)
AMCG00017781 acer2,LOC107691831,LOC107675399,LOC107601172,LOC107559953 coding upstream 1200 23330944 ~ 23345917 (-)
AMCG00017787 NA coding upstream 25862 23355606 ~ 23388495 (-)
AMCG00017789 NA coding upstream 81917 23411661 ~ 23422126 (-)
AMCG00017788 NA coding upstream 93947 23423691 ~ 23430213 (-)
AMCG00017790 NA coding upstream 116180 23445924 ~ 23457016 (-)
G93159 NA non-coding downstream 30279 23295800 ~ 23296246 (-)
G93092 NA non-coding downstream 31156 23294819 ~ 23295369 (-)
G93090 NA non-coding downstream 35844 23290332 ~ 23290681 (-)
G93038 NA non-coding downstream 487091 22839151 ~ 22839434 (-)
G93033 NA non-coding downstream 522141 22801371 ~ 22804384 (-)
G93173 NA non-coding upstream 114467 23444211 ~ 23540120 (-)
G93324 NA non-coding upstream 577831 23907575 ~ 23910679 (-)
G93350 NA non-coding upstream 704952 24034696 ~ 24037610 (-)
G93355 NA non-coding upstream 714450 24044194 ~ 24046369 (-)
G93399 NA non-coding upstream 971676 24301420 ~ 24301980 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other downstream 4571 23318093 ~ 23321954 (-)
AMCG00017725 NA other downstream 2967900 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 3907169 19412987 ~ 19419356 (-)
G92436 NA other downstream 4863349 18462784 ~ 18463176 (-)
AMCG00017675 NA other downstream 5536776 17781648 ~ 17789749 (-)
AMCG00017819 NA other upstream 934935 24264679 ~ 24270595 (-)
AMCG00017839 NA other upstream 1616351 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 1667800 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 2615397 25945141 ~ 25957648 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other upstream 2682744 26012488 ~ 26015942 (-)

Expression


Co-expression Network