G93500


Basic Information

Item Value
gene id G93500
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 24677165 ~ 24679900 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU116666
TGACAcctaaaagcatttatttttttatgcaaaaaaaaaaaaaaaaaattaaatatggtCACGTGTACATAAACTGTACACAGCTATGCCAAAACAACGCCTGGAATCATAGTATCAATGCAACAAGTAtttcactaaaataaaatataaaatgagctGGAAACAGGGAGACAAACTGGCaaaacatgttgaaaaatattttcagtctctaaaaacactcaaaatgaattaacagttctgaactgttttatttaattttgcaggCATCTAAAAtccaacagtttattttttttatgttttttttttatttttatttaaaacctttgCGTAAGCATCATTGTTTAATGTGGTAATTAACATCACCCCTGGAAAACGGTACATTTTTTGCACTCTCCTTTCAttccattacaaaaatgtaaaatctgcactaagttaaaaataaaaggcctCTGTAAAAGAACCAGATTACCTGCTAGAGCTTCAAAACATTTCACCTTGGTTAAAAATGTAGGCAAGAACTAAATCTGAAAAACATCAGGGACAGGAATCCGATGGGAATGGTAAAATCTGAACAGATCTGTCAAATCTAGAACAAGCAATTAACttagaggggagaaaaaaaaaacacacacacagatcttcCTCTGTGAGCTCCACTGGAAATACTCAGTTTTATGCCGAATATCCAGAGCCAGGCATCCTTTACCCAACAGAGTTCAGGCTAAAACTCAAAGATTTCTTCTGCAGCAGGAGGCAGCGGGACTGTTTGGCTTAGGATTCTCTTTAAAGTCTATGTGGCGACTCCTGTTGAAAGTAAAATTGCTTTCAGCAAACAAAGCCCATGACAACCAAAAGTAAGACATCTGCCttgacaaattaatatattcatgtttaGGGACTGCACATGTTGTATAACCagattaatatttgaaaaggtCATAAAAATAAGTCTCAGTGAAGCATAAACGGATGGTTGGACCTCCATTCAATGAGCTTATATGGTTTTCAAAAGGTTTTTCGCTGAGGAGAAAGCTTGCTTCAAAAATAGGGTTCGGAAGCAGTATTGTCTCTTCTTTTTCAGGGCAAAGAGCTTTACAGTCAAGGAAGTTCAGTTTCTGTACAGTGATGGGAGTCCTGAAGCAGGCGTTCTACTTATGTCTTCGGAAGATCTTTCTACCTTTGTAAATCCATCTGTCTCTGTGGCGCCACCCTCTTGGGGTCAGATTCTTTCTGCTGTTTTGGTATTTTGATGGTGATGGGCTCCACGATGCCGGGGCTGTCCTGGGGCGCCGCCGTCCTCTTCCTGCCACGCCCCCCAGCCTTCGCCTCTACGCCCTTCTCCATGCTGCTCGCTGGCTGAGTCTTTGGGGGCCTCCCTCGCCTGGGTTTTGGGATCACCGAAGCGCCCATCTCGTCTGAAGCCTTGTCGTCGGCGCTCTGGTGCATGTTCTCGGCCCCGTCTGCAACGGGGGCGGCCCGTTTCTTGCCTCGCTCCATGCTGGCATTGCCTGGAGCGGACGGCTCGGAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116666 True 1529 lncRNA 0.42 2 24677165 24679900

Neighbor

gene id symbol gene type direction distance location
AMCG00017826 NA coding downstream 27167 24628371 ~ 24649998 (-)
AMCG00017828 rhoh coding downstream 65158 24611429 ~ 24612007 (-)
AMCG00017827 LOC107660492,LOC107757584,LOC107700259 coding downstream 80376 24591017 ~ 24596789 (-)
AMCG00017824 NA coding downstream 109136 24440536 ~ 24568029 (-)
AMCG00017818 limch1 coding downstream 424081 24119477 ~ 24253084 (-)
AMCG00017834 ube2kb,ube2k,LOC107088242,LOC108261162,LOC100708886,LOC105026169,LOC102229303 coding upstream 5403 24685303 ~ 24701049 (-)
AMCG00017833 lias,LOC102787141 coding upstream 36550 24716450 ~ 24725692 (-)
AMCG00017832 NA coding upstream 52795 24732695 ~ 24739501 (-)
AMCG00017838 wdr19,LOC107591558,LOC107750430 coding upstream 79481 24759381 ~ 24788341 (-)
AMCG00017840 klhl5,LOC107656383,LOC107565971,LOC108412945,LOC107746020 coding upstream 119183 24799083 ~ 24839147 (-)
G93434 NA non-coding downstream 171555 24505382 ~ 24505610 (-)
G93399 NA non-coding downstream 375185 24301420 ~ 24301980 (-)
G93355 NA non-coding downstream 630796 24044194 ~ 24046369 (-)
G93350 NA non-coding downstream 639555 24034696 ~ 24037610 (-)
G93324 NA non-coding downstream 766486 23907575 ~ 23910679 (-)
G93509 rl9,rpl9,LOC107562595,LOC107700291 non-coding upstream 46038 24725938 ~ 24730222 (-)
G93576 NA non-coding upstream 242567 24922467 ~ 24927188 (-)
G93591 NA non-coding upstream 270068 24949968 ~ 24950248 (-)
G93639 NA non-coding upstream 426902 25106802 ~ 25107082 (-)
G93641 NA non-coding upstream 430990 25110890 ~ 25111090 (-)
AMCG00017819 NA other downstream 406570 24264679 ~ 24270595 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other downstream 1355211 23318093 ~ 23321954 (-)
AMCG00017725 NA other downstream 4318540 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 5257809 19412987 ~ 19419356 (-)
G92436 NA other downstream 6213989 18462784 ~ 18463176 (-)
AMCG00017839 NA other upstream 266195 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 317644 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 1265241 25945141 ~ 25957648 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other upstream 1332588 26012488 ~ 26015942 (-)
G93795 shisa3,LOC102786300 other upstream 1424126 26104026 ~ 26107805 (-)

Expression


Co-expression Network