G93509 (rl9,rpl9,LOC107562595,LOC107700291)



Basic Information


Item Value
gene id G93509
gene name rl9,rpl9,LOC107562595,LOC107700291
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 24725938 ~ 24730222 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>TU116675
gtgtaaaaagaaaatgaaatgtggaaacatttagtttggctataaatctgaaataaaatgccATTACTCAGGTTTGGGGCTAAACttgcttttatttcacaaagGACATAGATGTTACTCGCGAGGCCTCAACCACAGTGATGATCTCGCTCACGTCAACGCCATCCTTCTGCACGGGTGTCGTGTGTTGGATCAGGTCGCTTCAAGTGTTTATTGTTCTGGATCCACTACTGTTCCCTTCTCGGAGACGTAGATACCATCCAAGAATTTTCTGATATCCTTGTTTTTGACTGTGGTTGCCTGCTGGATCAGAGCAGCTGCAAAACAAAGACTTGGGTAAGTCAATCCTGACGGTCAGTGCAGTTACATTCACATAGATTATCACAGAATTAGCAGTCAATCTTAAAAGCACACACAACATTTAGGTCATAACTAGCCAATTTATTCTCTGGTTTTAATCAAAGTTATAAAACAACCAAATCCCCTTCCCTAGAAGTTAAAATTCT
>TU116683
gtgtaaaaagaaaatgaaatgtggaaacatttagtttggctataaatctgaaataaaatgccATTACTCAGGTTTGGGGCTAAACttgcttttatttcacaaagGACATAGATGTTACTCGCGAGGCCTCAACCACAGTGATGATCTCGCTCACGTCAACGCCATCCTTCTGCACGGGTGTCGTGTGTTGGATCAGGTCGGCTGAAGAGACAAGAATCAGAGAATGAAACCTGCACAGCAGCAGCGTGGTGGTCAAATCTCAACTCATTCTCGGGTGGACTGTTCTCTCTGATCAAAGATCTAGACAGCAGTCGTTAAAATTCACACAACAGTTTGTGAACAGATGAGTTTTGTAATTCataaatgcacaatgaaatTGAAATCTTGAATGGGATGTGAATTTCCATGCTTCAAAAAGGGTTGTTGTGAACATTGAACTTATGAATATACATATCTATACGTCACTCACTATGCACATCAGACTCAAATTAAATGATTATATAAACTTTATAACTGCTACATGTTCCAACTTGAAACGCACATATTTGGCACATCAGacaaatgagaaacacaaaacatgggACTTTCACACTGGATGCAACAAGCAAACTGCATCTTTGAGTGCAGCAAAACAATCTCCACAACAAACACGCCAGGGAGGCAACAGGGGAAAGCCAGTGGGCAGTTGTGTCGGGGCTGCATGTACTGTGCAGTAACTGCTTGTCAAACAGCAAACGCTAAACATCAAGAAGAGGATAgctactatatatttttaacagaagCAGATTTATTTAAGCCCCCTCATAGACCATCCTAAACCTCTCACAATTACCCCCAAAAACCTTACTGTAGGCTAATGTGTGTTTTGGGGTATTATATAGATTAAAATTAAGCATTATAGTATGAACATGGTATCCGATCACATCTGATGTTTGGGAGATAAACCATCGGTGCCAAGGAGTGCATGACACCATGAAAATTAACCTGGAATAACAAATGTATGGGGGTGTTAGACGTTCGACTGCCCCCCCTCCATGCATCATTTCTGTGGGAAACACTCAAGGCCGATTCTAACCTTCAAGTGTTTATTGTTCTGGATCCACTACTGTTCCCTTCTCGGAGACGTAGATACCATCCAAGAATTTTCTGATATCCTTGTTTTTGACTGTGGTTGCCTGCTGGATCAGACCAGCTCAATGTCGTTTCCTTCCAGAACCAGCTCATCTTTCTGTGCCTGGGAGACAGTGCATGCCACCCTGGCCTCATGCGCACTCTGCGGATGTACTTCTCGCCCAGGAAGTTCCTGATCTCGACCAGGCTGCCATTGTCCTGCATCACCACGTTGATGGGGAAATGGGCGTACACAGACCTCATCTTGTACCGGAAGCCCTGGAAGGAACACAGAAAAAGGTTAACCTCAACTGGGCAAACTAACAGCTCTGAGGGTTCTATGCTAATTTGGGAGGTCTTGGCAATAACTGACTTACACATGGGTCTGCAGTGCTTCATCTTATTTAGCCATTAAGatctgatgcacattttaaatgcaggtcCATAAATGTAGGACATTCTCAGGCAACAATCTTATTCTTGACAACACAGCACAAGAACTTCCAAATGTGTAATGGAGAGAGACTTACCATTGTCACTCCCTTGATCATGTTCTGCACATGACTGCAGATGGTGCGGACTGTAGCAAGCTCCTTTCTGTTACCCCACCATTTGTCTACACGAAGCTTCTTGTGATTCTTGCCCAGGAGACTGAGCTCCAGGTTGATGTGGTTGAACTCCCGGCGCAGGATCCCTCGGGGCCCCTTCACGATCACGGTTCGCCCTTTCAACGTCACCTCGACGTTGTCGGGAATGTCGACGGTCTGGTTGCTGAGAATGGTCTTCATTCTGGGAGCAGAAGAAATAAAGCACGTTAACAGCACGGCAGCAGTGGAGGACATGAAAACGTGGAACCATATTGATCAGTGGACTTGCTACGGCAACACAAGTGGCCCATCTCACCAGGAACTAAACGGGTAAACGAACTACTGGGTCATATGGAGTGTTAAAGTGAAACAAACTACATATAAAGTGACATTTGTGATTATCCTTGCAGTATTACTGTGCCTAAACATTACCCCGACGTACACCTCTGTTGCAAAACGTCAGAACCGGTGGCTAGTTTCTCAAATAAGCCCAGTACATACATTACTATACATTGAGAGAAACGTTAATGATCATTTTCAAGAATGGGACTCTAAAACGTAGCgacctttattattataatgcgGGTTAAAGACTTGGAGGGGGGAGAAGggcctgcattttttttaatgggatgATCTGCTCCGGACCGGCATGataaacattactttttgtGCCATCATCGGTGCTtgaacacattaatacacaacACATAATGTATATGGGAAGTTGTATTTCCTTCCAAAGTTGTTATTAGAGGCATATAGAGCCCAATAAATGAAGATTTTGTCGGATTTCAATGCAACTGCAATACGTGATGTAACTCCTTACCTCGCCGATGGTAGAGGAAAGGAAGAAGAGAGGACGTAAGCACGCAATTGTACTCTTC

Function


symbol description
rpl9 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL9 (ribosomal protein L9).

NR:

description
PREDICTED: replication factor C subunit 1-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU116675 False 506 lncRNA 0.40 2 24728842 24730222
TU116683 True 2584 lncRNA 0.44 5 24725938 24730222

Neighbor


gene id symbol gene type direction distance location
AMCG00017833 lias,LOC102787141 coding downstream 246 24716450 ~ 24725692 (-)
AMCG00017834 ube2kb,ube2k,LOC107088242,LOC108261162,LOC100708886,LOC105026169,LOC102229303 coding downstream 24889 24685303 ~ 24701049 (-)
AMCG00017826 NA coding downstream 75940 24628371 ~ 24649998 (-)
AMCG00017828 rhoh coding downstream 113931 24611429 ~ 24612007 (-)
AMCG00017827 LOC107660492,LOC107757584,LOC107700259 coding downstream 129149 24591017 ~ 24596789 (-)
AMCG00017832 NA coding upstream 2473 24732695 ~ 24739501 (-)
AMCG00017838 wdr19,LOC107591558,LOC107750430 coding upstream 29159 24759381 ~ 24788341 (-)
AMCG00017840 klhl5,LOC107656383,LOC107565971,LOC108412945,LOC107746020 coding upstream 68861 24799083 ~ 24839147 (-)
AMCG00017836 NA coding upstream 173560 24903782 ~ 24918826 (-)
AMCG00017837 ints10 coding upstream 197949 24928171 ~ 24942633 (-)
G93500 NA non-coding downstream 46038 24677165 ~ 24679900 (-)
G93434 NA non-coding downstream 220328 24505382 ~ 24505610 (-)
G93399 NA non-coding downstream 423958 24301420 ~ 24301980 (-)
G93355 NA non-coding downstream 679569 24044194 ~ 24046369 (-)
G93350 NA non-coding downstream 688328 24034696 ~ 24037610 (-)
G93576 NA non-coding upstream 192245 24922467 ~ 24927188 (-)
G93591 NA non-coding upstream 219746 24949968 ~ 24950248 (-)
G93639 NA non-coding upstream 376580 25106802 ~ 25107082 (-)
G93641 NA non-coding upstream 380668 25110890 ~ 25111090 (-)
G93660 NA non-coding upstream 642711 25372933 ~ 25381038 (-)
AMCG00017819 NA other downstream 455343 24264679 ~ 24270595 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other downstream 1403984 23318093 ~ 23321954 (-)
AMCG00017725 NA other downstream 4367313 20302000 ~ 20358625 (-)
G92591 nansa,LOC108416893,LOC108416857,LOC107723182 other downstream 5306582 19412987 ~ 19419356 (-)
G92436 NA other downstream 6262762 18462784 ~ 18463176 (-)
AMCG00017839 NA other upstream 215873 24946095 ~ 24949136 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other upstream 267322 24997544 ~ 25018212 (-)
AMCG00017861 LOC103354863 other upstream 1214919 25945141 ~ 25957648 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other upstream 1282266 26012488 ~ 26015942 (-)
G93795 shisa3,LOC102786300 other upstream 1373804 26104026 ~ 26107805 (-)

Expression



Co-expression Network