G93660


Basic Information

Item Value
gene id G93660
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 25372933 ~ 25381038 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU116881
TCTTTCCTGTTCATTAACAGATCTTTTAAGACAtccaaaaaaagacagaaaaaagatGGTGGCATATTGTCCAATTTGTGCGAAACCTGTGTATTTTGGTGAGAAGAAGCGCTCACTGGGCCGGGATTATCACCCGCTCTGTCTGAAGTGCTACCTCTGTAAACGGCAGCTCACTCCTGGAATGCATGCCGAGTATGATGAAAAGCCATACTGTAATCATTGCTACATGAAGCAGTTTGGCCCCAGAGTTAACAGAAGGTCGGTGCCACACTCATCTCTGGGAGCCGCATCTTAAGGAAGAAGAAAATGCTTCAGATGGATGTGTCTTTGATATTTAATGGGGTGCCTAACAGTGTTGTAAAATTATTGATTTGTAAAGTAAGATCCAAACCAAAAATTGAGATATTAAAGTAAACCTAACGTTAGCCTAGGTTTTAAGAGTCTGTATCATATTTTTTATGGGAGTTGGACTGCTTGTTACTGTACATACATAGTTTCTGTATATATCATGTTGTAATTACAAACACGATTaataacaaaattgtatttcacatgcTATATCAATATGGAGTAATCCAGagaagacacacagacaaacctccagtcatgtagtatttgtttaaatcataataacaataaaacatggcTGAGTTTCATTCAGGTCACCAGTGCACACTTTTAGTTTCTGTGCATCATCAGAATTGTTTTTTGTCTCCTATCTTAGACGTACACCCACAATGTTCATTTTTAACAGGGCTCACTGTCAATTACACTGTCTGTCCAACATATTAACTCAAACATGTAAAACTGAGTTGTACTAATGAAGTGTGAAAGTGCTATATTTATTTAGGTACtaagcttaattaaaaaatatatcgaGAATAATATGTGTTACCTGCTGGAGTGAGAGAACACCTTTAATTTGGTACTATTTGTACAGACTATGCAaatcattactattataatttcCCACCTACACCAGctctgtttaattttttttttaaataataatacccaTCTCCccatttaaatctattttctttcagttaaaaaaaatgtaagaaaggATGCATGTAAAACAATGTGCATCAGGAAATACATGTGTAATGCCAAAAgagaaagtgaaataataaaaattcctgcttatattttaa

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome
ko04672 Intestinal immune network for IgA production

RNA

RNA id representative length rna type GC content exon number start site end site
TU116881 True 1154 lncRNA 0.35 4 25372933 25381038

Neighbor

gene id symbol gene type direction distance location
AMCG00017855 NA coding downstream 6383 25346820 ~ 25366550 (-)
AMCG00017852 NA coding downstream 148652 25115938 ~ 25224281 (-)
AMCG00017850 NA coding downstream 267791 25100833 ~ 25105142 (-)
AMCG00017851 NA coding downstream 272302 25095198 ~ 25100631 (-)
AMCG00017846 NA coding downstream 292502 25075605 ~ 25080431 (-)
AMCG00017862 dnah6 coding upstream 441938 25822976 ~ 25923225 (-)
AMCG00017867 LOC107754176 coding upstream 652077 26033115 ~ 26049947 (-)
AMCG00017869 NA coding upstream 695690 26076728 ~ 26082767 (-)
AMCG00017870 NA coding upstream 715402 26096440 ~ 26097928 (-)
AMCG00017872 atp8a1,LOC107550857 coding upstream 731075 26112113 ~ 26193833 (-)
G93641 NA non-coding downstream 261843 25110890 ~ 25111090 (-)
G93639 NA non-coding downstream 265851 25106802 ~ 25107082 (-)
G93591 NA non-coding downstream 422685 24949968 ~ 24950248 (-)
G93576 NA non-coding downstream 445745 24922467 ~ 24927188 (-)
G93509 rl9,rpl9,LOC107562595,LOC107700291 non-coding downstream 642711 24725938 ~ 24730222 (-)
G93689 NA non-coding upstream 136248 25517286 ~ 25517600 (-)
G93718 NA non-coding upstream 428506 25809544 ~ 25809853 (-)
G93802 NA non-coding upstream 877058 26258096 ~ 26258367 (-)
G93816 NA non-coding upstream 972479 26353517 ~ 26353724 (-)
G93843 NA non-coding upstream 1117876 26498914 ~ 26499177 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other downstream 354721 24997544 ~ 25018212 (-)
AMCG00017839 NA other downstream 423797 24946095 ~ 24949136 (-)
AMCG00017819 NA other downstream 1102338 24264679 ~ 24270595 (-)
AMCG00017780 LOC101079287,LOC106577738,LOC100690429,LOC105925506,LOC108244244 other downstream 2050979 23318093 ~ 23321954 (-)
AMCG00017725 NA other downstream 5014308 20302000 ~ 20358625 (-)
AMCG00017861 LOC103354863 other upstream 564103 25945141 ~ 25957648 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other upstream 631450 26012488 ~ 26015942 (-)
G93795 shisa3,LOC102786300 other upstream 722988 26104026 ~ 26107805 (-)
G93796 NA other upstream 728022 26109060 ~ 26110074 (-)
AMCG00017902 NA other upstream 2457213 27838251 ~ 27839790 (-)

Expression


Co-expression Network