G93795 (shisa3,LOC102786300)


Basic Information

Item Value
gene id G93795
gene name shisa3,LOC102786300
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 26104026 ~ 26107805 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU117033
ATCGCATCGGGTTGTAATTTGTGTCCACCTTACATTTGAGTTATTATAGACCCTATGTGTGTCTggatttgtttatatgtttctatttattaatatgatacATATATGTGCAGCGAATTCCTAACACATTCCGCAGGTTTACATCAAAGCAACGTGTTGCAGGATCATTACAGTGTCTGTCCTGTTTATTTGCGCTTTCATTGGGTTGCACTTCTTGCTAAATAAACTTTCTGGATACTTTTTTTAGTTATATTTGTGGTTTGTGATTTCTGTCTTCATTTCATGCtgcttattgtaaagtgttgcatttcaatttaacaCTATTTGAATCATTGTAATTAgtcacttaattaattaaattgcgACACTTATCTGGAGGTAAAGGagcattaaatgtaaatgcgCTGGTTGTACAATCTGTCTTTTAACAGGGTTGTTTTAACGCAGATCTTTAACTTGCTTATATGCTTTGCCCAGTGGGATATTTTTGTGtctaatacatacattaaatgacaGGATCCATCGTGGATTTCATGCAAAAGTTTGAGGAACATCGGATCTTACGTGAGTTCATTAAAATGtCATTAATGTGCGGATCTACAGGCTACACAAATGAACACCCCTGTGCGTCTGAGTGACCGATGGAGAAGTAGTGCAGCGCAGACGTCcgcaccaatgggatcgctggaaTTGTGCAGcgctgcgcagaactgcggacgtCTGCGCTGAAACCGCGCTGTACTTACGAGCGGCGAACTGGGCGCTGTCCGGCTCCCGGTCGTTGGTGCAGCCGCCCTGGTCCAGCCTGTGGTCGGCGGCCGCGCAGCAGTACCTCAGCGCGCAGGAGCCGCAGCACACCGTGGCGTCCAGGGTGTCGAAGTCCTCCGGGCACTGGAAGCCGTCGTGGTAATTCCCATTGCCGCCCAGCCAGCCGTGGCAGTACTCCCCCTGCGCGTCCGACAGGCGCCCGGTCCAGGTGAAGTAGCCCAGCAAGAGGCAGGGCAGCAGGCGCAGCATCCCGGGGAGCGGGCCGAGGCTCTGGACGACTCTTGGCTAATGGATGTGAGATCCGCGGCCCCACTGCCTCCTCCTGGGTGCGCGGTGACAGACTGGGGGCGCTGCCTTCACTGGGACACCTCGGCGGTATCACTGCGCCCCATCCTGCTTCACGTCGACGGCACCCAGGTCACGCACTTGTACAGGCCAGGGAAGGGCGCAGGAGAGGAGCAGCCCCCCGGTGCGCCATGCTGTCTGTATATGATTTGAAAAGCCGTGAAAAGCCGTCCGGAGGTGTGACAGCCGCCCCTCGGCGCACGTGCTGCCGCCGCGACCCCCCGCAGCTCCGTGCGGCTGCGCAGTGCGTGCGGTCCTGCTGCTCCAGGTGCAGGTCAGGCTCGGTGCTGCATGGGGAGGGTCAGCCACGCAAGTGTCgtccgtgtgcgtgtgcgtgtgcgtgtgcgtgtgcgtgtgtgttgcaCTCTCTCTCGCTTCAGTTCAGAGCACTGGCTGTTGGGACCGCCTGGAGACGCGCACTTCTGACGTTGCTAGAGCTGACGTGCGCCAGtggtggggtgtgggggtgggggggctctgGACATCACAGACTATAAACTTATTTCAGTGGAATTCAAAAAGCCTGGACTTTATAGCATGCCTGCACAACCTAGATGTATTAGTTGCTTAGAAGTATTTCTCTCCCATTTTCTTCCTTGTTctttgtgtaataataataaccacagcACCTATTCTGTGTGCATGCTTCTAAAATTCCCAGACAACGTAAGAGATGGTCCATAGTCAATGTAATGCCACCACATATGACAGATGACTCAACATTGCAGatatttgttgtttctgttccaCTTATAAGGGTTTGATGGACTTTGCAAACCCTGTAATCAATCCAATACCGCTTTGACACCAGCTTTTTGTGGGTAAAACGCACAGCATGCCAATAGAAAGGATATCACATTTGTGCCAGTGCCAGTTTTCTTCAATATGGCCATTAAACATCTTCTGCAAAGCAACTTTCCATGAACTGTGGTACTGTAGTTTAAAAAGTCAAGTTCAATGCTTAGGGTGTGTGAGAtgtaaaaagattaataaacatCCTAAATTGTTGATTATttgatgtgtatgtgtgtgattacAATATGACGTATCCTCCAACACAATGCAGAAACAGCACAAACTGACCCTGAATTCGTCATAAGGTCAAGTTATTCCCTTTGGCTGATGTTTTCTAAACCTAACAGTGGCTCGGTTTCAGGAAAAGCTAAACAAAGAGAGTCTAACTATCTCAAATACATAAGATATAAGACACCTGCCATGCATCTCATACACAACcccaaaatgcattttcactttacaattgtattaatgCATTGCCCTCTAGTGGTTATTGGAGGAGAATTGAACTTGCTTTCTGCTGATTGTATGCTGTTTCAGTGGCCGTTTGGGATTTgtcaacatgttttaaatgttcaag

Function

symbol description
shisa3 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SHISA3 (shisa family member 3).

NR:

description
PREDICTED: protein shisa-3 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117033 True 2488 TUCP 0.48 2 26104026 26107805

Neighbor

gene id symbol gene type direction distance location
AMCG00017870 NA coding downstream 6098 26096440 ~ 26097928 (-)
AMCG00017869 NA coding downstream 21259 26076728 ~ 26082767 (-)
AMCG00017867 LOC107754176 coding downstream 54079 26033115 ~ 26049947 (-)
AMCG00017862 dnah6 coding downstream 180801 25822976 ~ 25923225 (-)
AMCG00017855 NA coding downstream 737476 25346820 ~ 25366550 (-)
AMCG00017872 atp8a1,LOC107550857 coding upstream 4308 26112113 ~ 26193833 (-)
AMCG00017876 NA coding upstream 176160 26283965 ~ 26407993 (-)
AMCG00017877 kctd8,LOC107589145,LOC107758511,LOC107678642,LOC107559281,LOC107706921 coding upstream 329956 26437761 ~ 26439111 (-)
AMCG00017874 NA coding upstream 336613 26444418 ~ 26452343 (-)
AMCG00017875 guf1 coding upstream 350413 26458218 ~ 26467868 (-)
G93718 NA non-coding downstream 294173 25809544 ~ 25809853 (-)
G93689 NA non-coding downstream 586426 25517286 ~ 25517600 (-)
G93660 NA non-coding downstream 722988 25372933 ~ 25381038 (-)
G93641 NA non-coding downstream 992936 25110890 ~ 25111090 (-)
G93639 NA non-coding downstream 996944 25106802 ~ 25107082 (-)
G93802 NA non-coding upstream 150291 26258096 ~ 26258367 (-)
G93816 NA non-coding upstream 245712 26353517 ~ 26353724 (-)
G93843 NA non-coding upstream 391109 26498914 ~ 26499177 (-)
G94008 NA non-coding upstream 1654881 27762686 ~ 27767331 (-)
G94012 NA non-coding upstream 1671232 27779037 ~ 27784050 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other downstream 88084 26012488 ~ 26015942 (-)
AMCG00017861 LOC103354863 other downstream 146378 25945141 ~ 25957648 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other downstream 1085814 24997544 ~ 25018212 (-)
AMCG00017839 NA other downstream 1154890 24946095 ~ 24949136 (-)
AMCG00017819 NA other downstream 1833431 24264679 ~ 24270595 (-)
G93796 NA other upstream 1255 26109060 ~ 26110074 (-)
AMCG00017902 NA other upstream 1730446 27838251 ~ 27839790 (-)
AMCG00017906 elavl2 other upstream 1991100 28098905 ~ 28144589 (-)
G94172 NA other upstream 2766356 28874161 ~ 28875923 (-)
G94238 pla2g12a,LOC108263807,LOC102792247 other upstream 3161430 29269235 ~ 29273168 (-)

Expression


Co-expression Network