G93891


Basic Information

Item Value
gene id G93891
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 26983969 ~ 26988035 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU117138
aacacagtattagtatggtgttcctaataatcttttaggtgagtgtatatgtctgACTTTAAAGAGCATTCAAACGTGTTTCCTTCCCTTTGAAGTTTGAAGAGCCAATAAGAACCCTGGATTTAAAAGAGTGTTCAGCCGTGCAGTTTGATTACTCTCAAGATAAAGTCAACTGTTTCTGTCTAGTATTTCCTGAAAGAACGTTTTATTTGTGTGCCAAGTCTGGAGTCGAAGCTGATGAATGGATCAAGATTCTGCAGTGGAAACTGtcaCAGATTAGAAAGGGCAGATGATCGGACGGAGAGGAAGTGACAGCTTCTCTGCTACGAAGACAAAAACACTGAGGACTTTTTCGACATGTGACACGCCTGTTTACGAGCCTTTTAAATACCACACAGCCGATATTTAGCGACACTGTGGACGTGATTTTCACTTTCACCaaggaaactgaaatgtattaattatatcaTTCAAACACGAGAACCTGTATGTTTCATTACCCTCAGACGTTTTCAGGAACAATCGGCTAACCTAAATCTTTAACAGCTGAGAATACCAACGAATTACCTTCACACGGCGAGGGATTTTTGGCAAAACGGGCCTTTGCTGCGCGAAACGGTTGTCGCAATCTCCTGTCTGGCATAAAAACCGCAACGTTTGCTTGAAAGTGCTTCCTCTCAGAAAGATTGATACACGTGTGGATTTGTAACACTCGGGCGCTTCAGAtgtttctaaaaacaaatatctgggAATACTCTTGTGTTTCTCAGCTCTATTAGTCGAGGTTGTCACTCAAAGGCATTTGTGCTATCTGGAGGAGTACAATTTGAGTAGTTGAATCAAAACGGCGTGCTCAGAAGGACAGTCCTGATTTCTCACTCTGTATACCATCCGACACGGGGTTAAGATTTATTCATATAATCGAATAGATATCCAATGAGCcgtcatatttttttatttcatttaaaacctgtatttgttttccatgttttaatAACGCGGtctaatatgtatttatatatttaacttcGAAGGCCAGCATCTCTGCAGCATTTAGTTTGAGTGAAGGAAAATGTCTTACAGGCGCAATGGAAAAGCAGTATTGCACCTAGCAGAAAACCAAGTAAGAAAACTGTCTACAACTGCTCCAAAGTGTTACAATGAAAGAAGCATATACTTAAGCCtcttctgcatttatttatgtatagatTTCATTTCTTaacatgtttatatgtgtgtattttagtaTATGTGCTGCAGAAGCATTGGAAATATGAAGAATGTAAGCGTGTAAACACCACAGCTCTCAATGTGCTGTATGGACTACACACTACACAGTGGGAATTCAAATGAAAACGTTTATATGGTTGAAGGAGAAATAAACTTCTCTGTGCTCTTCTTTAGACTACCATACAAAATGAGTGTAATAGAGTCATTAGCAGTGTATACATAAGTAGTACAAATTCTGTCCTACATTAATGTATCATTTACCTAGTCCTGGAAAGTACATCTATTGTTTAACTAATTAGAGATCATTCTGAATTTGTACAACTAAGAGATGggaataagaaagaaagaaagaaagcaagccATTTTTAAAGTTTTCGAGATCATACCGAGAGATTTCATGCACATTGTCCGGTCATTCAGTGTGAGGTGTAATACCAAATGACACTCAATTCCAGTTCATCACATCATGATATTCAGGGGCGTACGAAGGTCCTGTTGAAGTGGTTTTGAATTGTACTGTTTTTAACGGTTTCTATGgacatgtatgtttttgtttgttattttgcttcTGTTGACTGAACTGAAGATGCTTAGAAGCGTTGCAGTGTTCTATAGAAAAGGAGAGCACTCAAGCTCTCTATCATGGGCTGTAGTATTGAAATattgtgaaatggaaaacaataaaagttgGTCT

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117138 True 1924 lncRNA 0.38 3 26983969 26988035

Neighbor

gene id symbol gene type direction distance location
AMCG00017881 NA coding upstream 16717 26939374 ~ 26967252 (+)
AMCG00017882 gabrb1,LOC103364303 coding upstream 93138 26871001 ~ 26890831 (+)
AMCG00017883 NA coding upstream 153799 26829576 ~ 26830170 (+)
AMCG00017873 gnpda2,LOC106521223 coding upstream 526339 26453244 ~ 26457630 (+)
AMCG00017871 grxcr1,LOC107601454,LOC106600617 coding upstream 733323 26236014 ~ 26250646 (+)
AMCG00017888 NA coding downstream 12527 27000562 ~ 27001794 (+)
AMCG00017889 pitx2 coding downstream 281200 27269235 ~ 27278351 (+)
AMCG00017890 elovl6,LOC107669077,LOC107723810,LOC107662963,LOC105906181 coding downstream 363653 27351688 ~ 27360732 (+)
AMCG00017892 NA coding downstream 423325 27411360 ~ 27415163 (+)
AMCG00017897 NA coding downstream 756878 27744913 ~ 27768328 (+)
G93878 NA non-coding upstream 67488 26915913 ~ 26916481 (+)
G93842 NA non-coding upstream 484799 26498712 ~ 26499170 (+)
G93736 NA non-coding upstream 1030229 25953504 ~ 25953740 (+)
G93735 NA non-coding upstream 1031592 25952068 ~ 25952377 (+)
G93734 NA non-coding upstream 1032571 25951154 ~ 25951398 (+)
G93938 NA non-coding downstream 296687 27284722 ~ 27285066 (+)
G93986 NA non-coding downstream 710689 27698724 ~ 27700728 (+)
G94039 NA non-coding downstream 853018 27841053 ~ 27841261 (+)
G94055 elavl2 non-coding downstream 1109698 28097733 ~ 28099214 (+)
G94057 elavl2 non-coding downstream 1112698 28100733 ~ 28102094 (+)
AMCG00017843 NA other upstream 1931595 25050309 ~ 25052374 (+)
AMCG00017829 smim14,LOC107700293,LOC107757606 other upstream 2268239 24705270 ~ 24715730 (+)
AMCG00017817 phox2b,LOC101065912,LOC106604546 other upstream 2871859 24108560 ~ 24112110 (+)
AMCG00017783 NA other upstream 3654400 23301615 ~ 23329569 (+)
AMCG00017745 NA other upstream 6133352 20848356 ~ 20850617 (+)
AMCG00017886 NA other downstream 4856 26992891 ~ 26997452 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other downstream 484846 27472881 ~ 27697379 (+)
AMCG00017910 NA other downstream 1643857 28631892 ~ 28646750 (+)
G94275 NA other downstream 2445377 29433412 ~ 29450347 (+)
AMCG00017978 NA other downstream 3831834 30819869 ~ 30831867 (+)

Expression


Co-expression Network