G93986


Basic Information

Item Value
gene id G93986
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 27698724 ~ 27700728 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU117246
CCGACACACTGCGTCACGCCCCTGACTCCCTGCCGCTGATCTAGCGACGGGATCAATGCGTCGCTGGGGACGAGAGCGATCAGTCTGTCCCTCTATGGACAGTGACTGGAGTCCATCGCTTGCCAAGACGCTGCATTTCAACAGGACAGGGACACAAGAAGCGTTTTCTACAGCTGACTTTATTGGAGAGTCCAGAATTTCATCCAAACGTAACTTTATTATAAAGGTTGCATATTGGAATGTGCTTTACACACGCCCCTCCAAGCGAGACGCCACGCAGAGACCCCCGCACAGAGCACTGCGTCCCAGAGTCTCGGCTTGTTACAAAAGGGCCGCTCATGTTCATGGAGagcaagtgtgtgtttttactgaAGATAGGTTATACACAAGTATTACCTGAGTTGCAtacaaaacattgttattattaatatgaatttagtATCACGcccttaataaaatatatttatatgcacttAAGTACCTCAGTAAGGCAGTGTGGAGAAGAAGACGAATACAAGCAGAAGCTCTTTTTAAATTCTGCTCTTCAGCACAAACATGGCTCGTCTGATGACACGGCATCCCTTACGGGACTCCACCCACAGTAGGACGTGTTCACATGAAGCCGCTCGGACACGTGGAGTCTGACGGGCCATTACTCTTCCACTACGCTAAggaatgattacattttataatgtcaAGTATACACAACGCAAATCAATTAACAGAAACCATTAAAACGAAAGAAACTAAACTGTTAACGAGAGAGACGTtctgcttgctttttttttttacatacgtGTGCATGTCGTTgcttgttttagtttagttttgttttgaaagtaaagaaacacaaacgcacaaaactgataaaatgaaaaaatgccaCAATAGGGAATGTGTGGGAGGGGTCAGTGGCTGCCTGGGGTCGCTTTAAACGGGAGATAACATCCGCAGACCGGGCTTCTCGGCCAGCTTCCATTCCAGCTGCAGGGGTCAGTACACCGACCCAACCACAATCAAGACATTAAACACAGATTCGAGTTCTTCTACACTGTGGCCAAAGACACCCTTCTGATCCGAGGAGCCACCGGCGCAGAGGACCAGTGAAGCGTGCGGCTGACGAGTTTAACCACATCTACGGGGCGCCGGGCCGGGTGGGAACAGGAGCCAGGAGACGGACGGGCAGCCCTGTCCCGCACACAGATGAGGGGAAGGCTGATCCGGATCCCCTGCCACCGACCCGAGCCAAAACGAGCAAAGAAACGGCACAATGTGACACAAATATACTAGAGCAAACACCGGCAGCCACGAACCacaacaagacaaacaaacaaatacaagtttAGGGGGGGAAGAAAAGCTGAAATGGGCGGAGTTTGAGGGATTGTATAATAAGAGAAATTGAAATACCAAGACCGTTAATAAAGTGACCTGGAAATGCACGGACTGGAGGATTGGGTGTCTCTTCCCTtcagcagacagacacacagcttaATCATTCAGAAATCGGCCTCGCATAACAACAATACCAATAAAAAGGTCGCTGTTGAGAGCTGTGGTTATGGGATAAGCGGCACATTCGGTTGACACTAGGATTAAGTCCTAGGGCTGACATCGGTGCTACTGTAAAATAATCCACTTCAAATAAAGACACGAATGAGAGACGAGCTGGTGGCGACCAAGGCACATCGGAGTCGAGATCCTGGGCGTGGGGTAGAAACGTGGCACCGGATCCTCAGCGGAGCAGGTCCGCCGTGCGGGACGAAGccgggggagaggagaggagaggagaggagaggagaggaggagagaagcgCGGGTCTGAGCTGGAGGTCAGAGTCTGTGCGCTCAGGCGAGGTTAGGTGAGCAGTTGTCTGATCTCGCGGTGGACGTAGCACAGGAAGTCCATGTAGGACGCTCCGCCGTGGAGGCTCTTGTCTTCGACCAGGAACTGCCGGAAGACCATGTCCAGTTTCTCCTTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117246 True 1983 lncRNA 0.50 2 27698724 27700728

Neighbor

gene id symbol gene type direction distance location
AMCG00017892 NA coding upstream 283561 27411360 ~ 27415163 (+)
AMCG00017890 elovl6,LOC107669077,LOC107723810,LOC107662963,LOC105906181 coding upstream 337992 27351688 ~ 27360732 (+)
AMCG00017889 pitx2 coding upstream 420373 27269235 ~ 27278351 (+)
AMCG00017888 NA coding upstream 696930 27000562 ~ 27001794 (+)
AMCG00017881 NA coding upstream 731472 26939374 ~ 26967252 (+)
AMCG00017897 NA coding downstream 44185 27744913 ~ 27768328 (+)
AMCG00017901 NA coding downstream 73125 27773853 ~ 27787082 (+)
AMCG00017900 LOC107700316,LOC106919300,LOC106948245,LOC105915642 coding downstream 110494 27811222 ~ 27837126 (+)
AMCG00017904 NA coding downstream 207016 27907744 ~ 27909564 (+)
AMCG00017905 NA coding downstream 215698 27916426 ~ 27919140 (+)
G93938 NA non-coding upstream 413658 27284722 ~ 27285066 (+)
G93891 NA non-coding upstream 710689 26983969 ~ 26988035 (+)
G93878 NA non-coding upstream 782243 26915913 ~ 26916481 (+)
G93842 NA non-coding upstream 1199554 26498712 ~ 26499170 (+)
G93736 NA non-coding upstream 1744984 25953504 ~ 25953740 (+)
G94039 NA non-coding downstream 140325 27841053 ~ 27841261 (+)
G94055 elavl2 non-coding downstream 397005 28097733 ~ 28099214 (+)
G94057 elavl2 non-coding downstream 400005 28100733 ~ 28102094 (+)
G94069 NA non-coding downstream 742038 28442766 ~ 28444925 (+)
G94104 NA non-coding downstream 950420 28651148 ~ 28652294 (+)
AMCG00017898 kcnip4,LOC103360335,LOC100711851,LOC102780455 other upstream 1345 27472881 ~ 27697379 (+)
AMCG00017886 NA other upstream 701272 26992891 ~ 26997452 (+)
AMCG00017843 NA other upstream 2646350 25050309 ~ 25052374 (+)
AMCG00017829 smim14,LOC107700293,LOC107757606 other upstream 2982994 24705270 ~ 24715730 (+)
AMCG00017817 phox2b,LOC101065912,LOC106604546 other upstream 3586614 24108560 ~ 24112110 (+)
AMCG00017910 NA other downstream 931164 28631892 ~ 28646750 (+)
G94275 NA other downstream 1732684 29433412 ~ 29450347 (+)
AMCG00017978 NA other downstream 3119141 30819869 ~ 30831867 (+)
AMCG00018012 NA other downstream 4706701 32407429 ~ 32425235 (+)
G94838 clcn3,LOC106577864 other downstream 4760570 32461298 ~ 32466636 (+)

Expression


Co-expression Network