G94012


Basic Information

Item Value
gene id G94012
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 27779037 ~ 27784050 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU117276
GTTGAAGCTCTTGAAGTCCGGCCCATCGGTCCTGGGCTCTGGCAGGGGCATCTTGGCGTGCAGGGTCTCCATCAGGGCGGGGTCGTTGATGATGGCCTGTTCCCAGGGTGAGTGGTACGACCTGGGCACGGCGGTGCTGTTGAACCTCTCCGGAGGAATGTCCTTCAGAGGGACACCGTAGCCTGCGCCCAGGGGGCAGGGGAGACATGGCCGTTTCAGGGTCAGAGTCACGGCTTACAGGCTTACTGTCCTTGTCATAATagttataattttaatgttttctttatctcATCCATTTAAACCACTTAGGAAACAGATTCACAAGCCAACTTCAAATCTTTATTGACACAAAGCCTCGTCACTCAGCTCAGTCACAgagcactgaaaataaatggccGGTAATGGACTTGTTTAATTACTATTACATTACTATGATCCGTACTCGAAAAATACTCCAGATGTGTGATTTGTGCAGAGGTTGGTGTCATGAGGGACAGATTTCCCAGATTCTCAGGTAAGTCCTGGGAAGCCCAGTGTCCTTTAACTGGGATTGCAGAGTTAACACTCATTTTATTATCACCGCActtgcatttgcttttcatttgggGCAGAGATgtctaaccctggtcctggagagcaacagggcctacaggtttttgttttatccagatcattaactgcttaattgagccaattgtgggtcttaattaggcaaaatgtccctgtgttgcAGATATCTAGtaattggtgatttagagagaaCTGGGAAACATGCAGGATTGTGTCTCTCCGGGAACAGGGTTGGCCGCCCCCTGATTTAGGGCCTAGTTTTGGCATTGCTTTAAATCATTGTGCGCCAAGATgaacaaaaaaaggttttgaaacGCACTAATGAAACGCTCATTTGGTCAAACATGAGGGTCTCATCGTAGTCCTGGAAGAGCGGTCTTTACACACACGCTTCCAGAGAAACAGGGCATCCTGAGTGCCTGACCCTCTCGCTCAGATTACACAATTGTTTTCCTGAGCGTTTCATGctaaaggaaacaggaaggaaCGGCCACCTCCCCTTTGGCCCGCAATCTCCACAATCTGCCCTAATGCGCTCGATACCGGAGACCCTCCCCCGAACCGCGGCGCTCATCTCACTGCACAGACGCTGCTCTGCATTATCAGCTGTGGGGGGGATACGTTGTGACGGCAGTAGCTGCAGGAAACAATGagcattcataaaaaaaaatgctgggcTATTGactttatgaataataataagaaatactccaaagatatatatttattacgcATAAAGGAATGCTAGTCTTGACATAGGAGAGAATTTATAACAAACTTAATACTATATCAACATAATCCTCTATTATTCATCTACTTATAGAGATTCAAACGACAATCTGTCTGCAAAAATTGCGGGATGTGTGAGATGAAACCGTGACACTGTCCTTAATTTGACAACGTAAATAAGACTACATACAGATTGAGTCCATAGTTTTCACATGGCTCGTACAAATACTTTGATTTGATGCAaatttcttttatatattaaaaacaacaacaactactactaataatgttCTAATAGTTCCTTAAGCATTGTGTATTACATGTCCCTCATCCTGGATTATTTACTTAAAGTGAATCTTAAAAAAGGAACATGTCAAATAGAAATGAAGCCCTATACAAACAGTAGATATTTTTCCCGATAAGCCAAAATTGTATTATCCCTGGGAAACATACTACGACACGTCTGTGTTTTTAAGTCTTATTTCTATCCAGACATGGACCCTGTTTCTGTGTGAAGCTAATACCATGCATTCAGGACAGCTCCTGTTAGAAAAATGTTAACCCCCTCCTCCCTGTTTATGCCAGTTTCAGCCTTTTCGCACGAATGCAGAAATGTGTTATTGACCACAGACGACGTCAGCTGAACACTTGAAGACCAACCCACTGGGGGATTTTCCAGGAAAACTGCCATTATGTGAATGAACTTCCCACACGATCCTCCAGCCCTGCTGTCGATGACTGTGGTCTGAGCCATGTGTGAAGCGGCTCTGGGCACTTGTGGACTGCTTCTGTAAAAGTAGAGTTGAGGGACATGTTCTCTGTGAATTAAACCGGGTGGGTAGGTGTTTGGATGGGAAAGAGAAGGCTGCTGGGAGTGAAGCCCCCCAGCCCAGTGTCCCACCATGTCGTCCAAAGACGGCACCACTGAAACATCTGTGTCAGCTACAGCACAACTGCCTCCGTGAGGGTTAAAGGGTTTAAAGGGTAAAGTGCACTTCCTACTGGatgccaaccccccccccacactccctGGCTCCCGCTTGTAAACGAGATCTTAATCTCAGTGCGGATGGAGttcctgtttaaataattacaccGATACAGGAATGAAGGAAGAAATAtgtaaaagaagaaagaagaaaggagaaatagacagatagagagagaaggaaataaGGGAAAGGACAGCCTGTCGACAATGCTGAGAGCTGGAGTCGTCGGGTCAGGCTGGGCCAGGAGGACGCCGCGTTCCCCATTGTCTCTGTCTACATAAGCGGCCGCAGATGACATAACAGATAGCGCGGCTGTTTGGATTGTGTGGGGACTGGGGAAATGCCTGGCATGCCTTTGGTACAAATAGCAGACCGTTACGCAACAGTTTCCATCGCCGCCTGAAGAGCACACCCCCCCTCTCCGCTCTTCCCCGGctaatatttaattcagacgAATCGCAGAGACACTGCTGCCCAGATGCTGCACTCGACTCCATCCGCTAACTTCTCCTCACATTTAAATAACGATCGCAGAAAAAAAGAgcagtgtatattattatacgCAAGAAGagcatataaacacaaaaacactcatATATACGTGTCTGAACACTTCTCCCTGGATCTGCTGATAATTAGTTGcgtaaaaataaggaaaatggaTTTAAATTGCGTCTGAAAGTGTGTGTGCTCTCAGCCTGAATCGTAAGAGCTGTGCCGCTGATTTAAGCCCTTTTCTCGGGTGGGATAAGGATATGTCACTGCGAGACCCCCCAATTCTCATGTTGATTGACAGTGTGGCCCCCAGTCTATTCCTCTGCGTTCACCCACCTGGGGCGATGCTGTCGGGGTTCGGGGGGTTCTTGGGGTCGGGCGTGTTTGGGGGTGTTTTCGGTGACTGTTCCACCTCCAGGCTGGTCCCGTCGgctttgtttctctctgctgTTTCGCTGTCCTGAGGCTGAAGAGACACACAGTGTTCATCTGCACGTTGGCCTCGTTCTGGAAGTTCTCAAAGGTGTACTTCTCCGACCTCCGCTGGCGCATCTTGAAGAGGCGTGATCCCCGGTTGGACTGCAGGGACAGCTCCTCCAGCATGATGTCCTTGGGGATGCTGATCTTCTTGCCCAGGTCCATGGGGTCGGACTCT

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117276 True 3441 lncRNA 0.47 2 27779037 27784050

Neighbor

gene id symbol gene type direction distance location
AMCG00017899 NA coding downstream 55306 27698901 ~ 27723731 (-)
AMCG00017895 NA coding downstream 346461 27427479 ~ 27432576 (-)
AMCG00017893 NA coding downstream 352805 27415574 ~ 27426232 (-)
AMCG00017894 NA coding downstream 370480 27400504 ~ 27408557 (-)
AMCG00017896 NA coding downstream 383377 27368219 ~ 27395660 (-)
AMCG00017903 NA coding upstream 58162 27842212 ~ 27844771 (-)
AMCG00017907 NA coding upstream 649982 28434032 ~ 28443288 (-)
AMCG00017908 NA coding upstream 673646 28457696 ~ 28457938 (-)
AMCG00017909 cxxc4,LOC103148507,LOC106610359 coding upstream 784910 28568960 ~ 28569655 (-)
AMCG00017911 NA coding upstream 865891 28649941 ~ 28664695 (-)
G94008 NA non-coding downstream 11706 27762686 ~ 27767331 (-)
G93843 NA non-coding downstream 1279860 26498914 ~ 26499177 (-)
G93816 NA non-coding downstream 1425313 26353517 ~ 26353724 (-)
G93802 NA non-coding downstream 1520670 26258096 ~ 26258367 (-)
G93718 NA non-coding downstream 1969184 25809544 ~ 25809853 (-)
G94060 NA non-coding upstream 309418 28093468 ~ 28097158 (-)
G94073 NA non-coding upstream 635866 28419916 ~ 28420262 (-)
G94074 NA non-coding upstream 640982 28425032 ~ 28425243 (-)
G94137 NA non-coding upstream 949774 28733824 ~ 28735744 (-)
G94218 NA non-coding upstream 1423420 29207470 ~ 29207804 (-)
G93796 NA other downstream 1668963 26109060 ~ 26110074 (-)
G93795 shisa3,LOC102786300 other downstream 1671232 26104026 ~ 26107805 (-)
AMCG00017866 smim19,LOC107754471,LOC106604684,LOC106611785 other downstream 1763095 26012488 ~ 26015942 (-)
AMCG00017861 LOC103354863 other downstream 1821389 25945141 ~ 25957648 (-)
AMCG00017844 frmpd1b,frmpd1,LOC107750435,LOC107570223,LOC107655878 other downstream 2760825 24997544 ~ 25018212 (-)
AMCG00017902 NA other upstream 54201 27838251 ~ 27839790 (-)
AMCG00017906 elavl2 other upstream 314855 28098905 ~ 28144589 (-)
G94172 NA other upstream 1090111 28874161 ~ 28875923 (-)
G94238 pla2g12a,LOC108263807,LOC102792247 other upstream 1485185 29269235 ~ 29273168 (-)
AMCG00017972 dcaf10 other upstream 2801679 30585729 ~ 30596417 (-)

Expression


Co-expression Network