G94359


Basic Information

Item Value
gene id G94359
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 29998354 ~ 30002282 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU117710
ttttttttaaacttacagAAAGTAAAAATGTTGCTACAACCTTGATTTGTGCAACAGGCAGCCATTTGAAAACCACGGCCTGCCAATCACAGCCTTTTCATTCTTTGTTGCTATAGCAAGATCTtactgaggaaaaacaaaacaaaccaaaaacaaaaaacgaccaaaaaaacaaaaccaaccatcaaaaataaaataaaaaacttatataaaaaaaaaaaaaaaaaaactaagagcCCCCcaacaaattattaaaagcaCTGACCCAAACTAGATACTGGTCCCCAAAGTCCTCGGCTGGGTTTACACTGGGGGGTGACAGTAGAAATCGTGGAATGCTAAAATGGAACTTCGCTCTCGAGATTCAAACATCGTTCCGCCGTCGCACTTCCACCAGGTCAGTCCATCCAATACGCCAGTCCTTTACAGGAGCGCATTTAAGGTAGGGGTGGGTGAAAAGAGGGAGGAATAAAAGGCAggggaggtggggagggagggggcgcCTGGTCTTAATCGTCGTCCTCGTCGTCCTCGTCGTCCGGCTCCCGCTTCCGCTTCTCGCCCTTGGCGCCCTCCTCGTCGTCTTCCTCCTCCTCCCCGTCCTCGAGGTCATCGTCCTCCTCGTCCTCGCCCTCttcgtcctcgtcctcgtccaCACCGTCGCCATCGACCTCCCCGTCGGAGTCGGAGGCCTCCTGGTCCTCGATGTCGTAGCC
>TU117711
ttttttttaaacttacagAAAGTAAAAATGTTGCTACAACCTTGATTTGTGCAACAGGCAGCCATTTGAAAACCACGGCCTGCCAATCACAGCCTTTTCATTCTTTGTTGCTATAGCAAGATCTtactgaggaaaaacaaaacaaaccaaaaacaaaaaacgaccaaaaaaacaaaaccaaccatcaaaaataaaataaaaaacttatataaaaaaaaaaaaaaaaaaactaagagcCCCCcaacaaattattaaaagcaCTGACCCAAACTAGATACTGGTCCCCAAAGTCCTCGGCTGGGTTTACACTGGGGGGTGACAGTAGAAATCGTGGAATGCTAAAATGGAACTTCGCTCTCGAGATTCAAACATCGTTCCGCCGTCGCACTTCCACCAGGTCAGTCCATCCAATACGCCAGTCCTTTACAGGAGCGCATTTAAGGTAGGGGTGGGTGAAAAGAGGGAGGAATAAAAGGCAggggaggtggggagggagggggcgcCTGGTCTTAATCGTCGTCCTCGTCGTCCTCGTCGTCCGGCTCCCGCTTCCGCTTCTCGCCCTTGGCGCCCTCCTCGTCGTCTTCATCTTCCTCCTCGTCATCGTCGTCGTCTTCCTCTTCAACCTCTCCTTCTTGTCCAACGTCTTCCTCCTCGTCTTCATCCTCCTCGCCTtctacctcctcctcctcctcctcgtcgtcGTCATCATCCTCGTCGAAGTCCTCCTCCTCCCCGTCCTCGAGGTCATCGTCCTCCTCGTCCTCGCCCTCttcgtcctcgtcctcgtccaCACCGTCGCCATCGACCTCCCCGTCGGAGTCGGAGGCCTCCTGGTCCTCGATGTCGTAGCC
>TU117712
ttttttttaaacttacagAAAGTAAAAATGTTGCTACAACCTTGATTTGTGCAACAGGCAGCCATTTGAAAACCACGGCCTGCCAATCACAGCCTTTTCATTCTTTGTTGCTATAGCAAGATCTtactgaggaaaaacaaaacaaaccaaaaacaaaaaacgaccaaaaaaacaaaaccaaccatcaaaaataaaataaaaaacttatataaaaaaaaaaaaaaaaaaactaagagcCCCCcaacaaattattaaaagcaCTGACCCAAACTAGATACTGGTCCCCAAAGTCCTCGGCTGGGTTTACACTGGGGGGTGACAGTAGAAATCGTGGAATGCTAAAATGGAACTTCGCTCTCGAGATTCAAACATCGTTCCGCCGTCGCACTTCCACCAGGTCAGTCCATCCAATACGCCAGTCCTTTACAGGAGCGCATTTAAGGTAGGGGTGGGTGAAAAGAGGGAGGAATAAAAGGCAggggaggtggggagggagggggcgcCTGGTCTTAATCGTCGTCCTCGTCGTCCTCGTCGTCCGGCTCCCGCTTCCGCTTCTCGCCCTTGGCGCCCTCCTCGTCGTCTTCATCTTCCTCCTCGTCATCGTCGTCGTCTTCCTCTTCAACCTCTCCTTCTTGTCCAACGTCTTCCTCCTCGTCTTCATCCTCCTCGCCTtctacctcctcctcctcctcctcgtcgtcGTCATCATCCTCGTCGAAGTCCTCCTCCTCCCCGTCCTCGAGGTCATCGTCCTCCTCGTCCTCGCCCTCTGCTCCACGGGGGAGAGAAAGGCAGGAGATCAGGACAGATCTTTTAGAGCCGGGCtggaatccccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117710 False 716 lncRNA 0.49 3 29998354 30002282
TU117711 True 854 lncRNA 0.50 4 29998354 30002282
TU117712 False 839 lncRNA 0.49 3 29999873 30002282

Neighbor

gene id symbol gene type direction distance location
AMCG00017945 NA coding downstream 15098 29976744 ~ 29983256 (-)
AMCG00017944 trmo coding downstream 22549 29971090 ~ 29975805 (-)
AMCG00017947 NA coding downstream 31728 29965499 ~ 29966626 (-)
AMCG00017939 bnc2,LOC106933596 coding downstream 413922 29577109 ~ 29584432 (-)
AMCG00017937 bnc2,LOC107737408,LOC107737409,LOC107678088 coding downstream 453449 29538155 ~ 29544905 (-)
AMCG00017949 NA coding upstream 9028 30011310 ~ 30030524 (-)
AMCG00017955 NA coding upstream 110008 30112290 ~ 30112964 (-)
AMCG00017954 NA coding upstream 119583 30121865 ~ 30129314 (-)
AMCG00017963 cisd2,LOC106602754 coding upstream 429921 30432203 ~ 30439609 (-)
AMCG00017967 NA coding upstream 487194 30489476 ~ 30490828 (-)
G94358 NA non-coding downstream 841 29996249 ~ 29997513 (-)
G94337 NA non-coding downstream 83517 29911982 ~ 29914837 (-)
G94246 NA non-coding downstream 711607 29286207 ~ 29286747 (-)
G94218 NA non-coding downstream 790550 29207470 ~ 29207804 (-)
G94137 NA non-coding downstream 1262610 28733824 ~ 28735744 (-)
G94392 NA non-coding upstream 106689 30108971 ~ 30109182 (-)
G94483 NA non-coding upstream 453916 30456198 ~ 30461173 (-)
G94482 NA non-coding upstream 457267 30459549 ~ 30460888 (-)
G94533 NA non-coding upstream 608539 30610821 ~ 30614319 (-)
G94563 NA non-coding upstream 716070 30718352 ~ 30721502 (-)
G94238 pla2g12a,LOC108263807,LOC102792247 other downstream 725186 29269235 ~ 29273168 (-)
G94172 NA other downstream 1122431 28874161 ~ 28875923 (-)
AMCG00017906 elavl2 other downstream 1853765 28098905 ~ 28144589 (-)
AMCG00017902 NA other downstream 2158564 27838251 ~ 27839790 (-)
G93796 NA other downstream 3888280 26109060 ~ 26110074 (-)
AMCG00017972 dcaf10 other upstream 583447 30585729 ~ 30596417 (-)
G94543 NA other upstream 625706 30627988 ~ 30658493 (-)
AMCG00018000 slc1a1 other upstream 2257425 32259707 ~ 32263865 (-)
AMCG00018004 NA other upstream 2269412 32271694 ~ 32276372 (-)
AMCG00018007 NA other upstream 2283203 32285485 ~ 32308080 (-)

Expression


Co-expression Network