XLOC_006179


Basic Information

Item Value
gene id XLOC_006179
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 40327560 ~ 40330374 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013411
AGCGTCTGGAAGGAATCATGAAGAGGACTCGTAAAAGTGATGCAGGAGCACagAAAGATGTTAAAACTCCAACTCAAGTGAATGGCAGAGTCACTGACAGCTAATACAGAAAAATCCATCAGAAGCTCTTCATAGTGGGGCGACAAACCAATCACCAGTGAGCTCTGTGTCCTGGGATGCAGCACTGGTCATTAATGGAGCTCCACccactaagcatcagaatggacTGTCCTCCAATGGAGACGCAGCAGACTTTGAGGAGATATTCAAGCTGTCCAATCACagtgggaacagtgggcagggTCAACCGGCTGACCCAGTCAGATGGCCTTTGAGGGAGGGGAACCGTTCATGATGAAAGTATGGCCTATAACCTCAACATGTGGCAGAGGTGGTGTGAGAGATAAGATATCAGCATCTTCTGGATATAAAGAGAAGAAGAGAAGCCTACCCTACCAATGCTTCCACCCTGACGTGTGCCAAACCAACAAAAACAGACTGCTTTAACTTTAGAAACACAGCCAAGTCGGACGCCCTCTGGAGAAAGTGCCAGAAGAGACCTTAAAGAGACACTTAAATACATATACAATGTTTGCAAAAAGTCTTTGTCCATCTCACTGTGTGTGTCATGGTGCAACATTTGTTGAGTTTCTTTAACAAGTCACCTGCCGATTATGTGCTGCACCTTAAAAGAGTCGCTATATATTGAATTTTAGAAAAGACAACTTGGcttatctttataatatgaattgttgttgttgttcttgttatGATGTATTGTTATCGTTCTTTTAAGTAGAAACAAAAGCAAAGTGTGTCTTGAACTATTATGTTATTTAACATGTGGCGCATCAGAAGAGGCCGATATTCTGTATGTTAATGTATATTTGCCTGATTATGACAGACCTGTGGAATAAATCCTTATGAAAGGG
>TCONS_00012162
CGTCTGGAAGGAATCATGAAGAGGACTCGTAAAAGTGATGCAGGAGCACagAAAGATGTTAAAACTCCAACTCAAGTGAATGGCAGAGTCACTGACAGCTAATACAGAAAAATCCATCAGAAGCTCTTCATAGTGGGGCGACAAACCAATCACCAGTGAGCTCTGTGTCCTGGGATGCAGCACTGGTCATTAATGGAGCTCCACccactaagcatcagaatggacTGTCCTCCAATGGAGACGCAGCAGACTTTGAGGAGATATTCAAGCTGTCCAATCACagtgggaacagtgggcagggTCAACCGGCTGACCCAGTCAGATGGCCTTTGAGGGAGGGGAACCGTTCATGATGAAAGTATGGCCTATA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000100077

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013411 False 932 lncRNA 0.42 5 40327560 40330374
TCONS_00012162 True 370 unprocessed_pseudogene 0.49 4 40327562 40328237

Neighbor

gene id symbol gene type direction distance location
XLOC_006178 golga7bb coding upstream 265730 40019001 ~ 40061830 (+)
XLOC_006177 BX005216.1 coding upstream 358095 39969349 ~ 39969465 (+)
XLOC_006176 NA coding upstream 453932 39845264 ~ 39873628 (+)
XLOC_006175 NA coding upstream 600096 39684471 ~ 39727464 (+)
XLOC_006174 marveld1 coding upstream 794195 39532050 ~ 39533365 (+)
XLOC_006180 slc25a28 coding downstream 4353 40334727 ~ 40354313 (+)
XLOC_006181 NA coding downstream 29786 40360160 ~ 40419304 (+)
XLOC_006182 got1 coding downstream 107176 40437550 ~ 40456995 (+)
XLOC_006183 hpse2 coding downstream 171081 40501455 ~ 40668077 (+)
XLOC_006184 hps1 coding downstream 355759 40686133 ~ 40716702 (+)
XLOC_006165 NA non-coding upstream 2043361 38226076 ~ 38284199 (+)
XLOC_006163 BX322660.1 non-coding upstream 2176923 38150517 ~ 38150637 (+)
XLOC_006186 BX294129.1 non-coding downstream 424206 40754580 ~ 40808436 (+)
XLOC_006189 NA non-coding downstream 658041 40988415 ~ 40989361 (+)
XLOC_006191 NA non-coding downstream 1466593 41796967 ~ 41799750 (+)
XLOC_006193 NA non-coding downstream 1491257 41821631 ~ 41854384 (+)

Expression


Co-expression Network