AMCG00018044 (LOC107592484)


Basic Information

Item Value
gene id AMCG00018044
gene name LOC107592484
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 391725 ~ 418680 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018044
ATGTGGTGGCAGCTTCCGCCAGACTCGCTGTGCTGCGCCGTGGGGCTGCTGGAGCGGGGGGGAGGGGTGGCACAGCAGGCGATGGAGAGCTGCTCCTCGGAGAtggtgaaggaggaggaggaggcgctGTGGGAGAACGTGGAGAGCAACCGCTACATCCTCAGCCGCTACATCAACCCCAACAAGCTGACCCCGTACCTGCGGCAGTGCAAGGTCATTGACGAGCAGGACGAGGATGAAGTGCTCAACTCGTACATGCTGGTGTCCAAGGTCAACAGGGCAGGTAGCTCACCAGAAAAGGGTCTGTTGAGGGTCAGCGTCCTGAAGGTGGCCCAGATCTTGCAACTGCAGGTGCAGTCCAGCCTCAGGGGGCTGAGGGCCGAGGTTTCGTCCATTGACTGGCCACAGTCAGGCCAGGCAGTGCCAAAGACACAGAATCAGGGCAGACAGGTGCACTGGTGGGATACGGCCTCGTTCCCGCAGAACAGAGGGCGGCTGCTGGACATCCTGCACACTAAGGGCCAGCGCGGGTACGTGGTCTTCCTGGAGAGCCTGGAGTTCTACTACCCTGATCTCTACAAGCTGGTGACTGGGAAGGAGCCCACGCGCAGGTTCTCCACCATCGTTGTGGAGGAGGGCCACGAGGGCCTGACGCAGTTCCTGATGAACGAGGTGATCAAGCTACAGCAACAGACTAAGGCCAAGGACGTGCAGCGCGTGGAGATACTGAGCAAGAACCAGACGCTGGAAGACGAGCACAAGAAGCTGCGGCTGGTCAACCAGGAGCTGCTGACCTTCCAGGAGCGATACAACAAGATGAAGGAGGAGCGGAACAACTGCAACGACGAGCTCATGAAGGTCAAGGATGACAACTACAACCTGGCTATGCGTTACGCCGGGCTGAGCGAGGAGAAGAACATGGCCGTGATGAGGAGCCGGGACCTGCAGCTCGAGATTGACCAGTTGAAGCACAAGCTGAACAAGGTGGAAGAGGAGTGCAAGCTGGAGAGGAAGCAGTCCCTAAAGCTGAAGAACGACATCGAGAACCGTCCACGCCGGGAGCAGATCCTGGAGCTGGAGCGCGAGAATGACAACCTAAAGCTGAAGATCCAGGAGCTGCAGTCCATCATACAGTCGGGGAAACCGCTGCCAGACTCAGAGAAGGCCATCCTGGACATCTTGGAGCATGACCGGCAGGAGGCGCTGGAGGACCGGCAGGACCTGGTGAACCGGCTGTACAACCTACACGAGGAGGTGCGGCAGGCCGAGGAGCTGCGCGACAAGTAcctggaggagaaggaggaccTGGAGCTGAAGTGCTCCACGCTGGTGAAGGACTGCGAGATGTACAAGAACCGCATGAACACCATCATGATCCAGctggaggaggtggagagggagagggaccaGGCTTTCCGCTCTCGAGACGATGCCCAGAACCAGTTCTCCCAGTGCCTGATCGACAAGGACAAGTACCGCAAGCAGATCCGCGAGCTGGAGGAGCGCAGCGACGAGCTGCACATCGAGATCGTGCGCAAGGAGGCCAAGATCGTCAACCTGGAGTCCAAACTGCGCCGGCTGTCCAAGGACGTCAACTGCTTGGACCAGAGCTTGCCTCGAGACATCCCCATGACCATCATCTCTGCAGCTTTCGGCGCACAGGACCCGAAGAGCAACGGGCAGGAGGACGAGTCGGACGAGGAGTCCCCAGAGGACAGTCGCTTCTTTGTTCCCATTGCTGAACCCCGCCTGAAACGCAGGCCCAACCTCAAGGCCCTTACACTCCTGCGTTGCCGGACCGACAGCATCATGTCCACGATCCCGGAGCCGCCGGGGAACGACTCCATCGTCCGACGCAATAAGGAAGGGGAGCACGACACCCTGCCCAGGAGCCTGAAGGACTTTGATTGTGACAGCTTTGATAACCAGGGCATCTGTGATGAAGACCTGGACAGGTTCTCCTATGGTCCGGCCTCGacccactcctcctcctcctcgcacCAGTCCGAGGTGCTGGACTCCTACGAACTGGAGCAAGTCAACAACATCTTCAGGAAGTTCTCCCTTGAGAGGCCCTTCCGCCCATCCGTGACATCCTTCAGCCGGATCAGTGGCACGCTGCGGCCCGTGCAGGAGCTGTCCGTCCCGGGAGACTCGCTGCTGTCCGAGGTCACGCTGCTGGGTGGCAACGACAGCGGCATCTTCGTCTCGTCCGTGCAGCCGGGCTCCAGTGCTGACCGGGCCGGCCTGCGCGAGGGACAGCACCTCCTGCTGCTGGAAGGCTCCATTAAAGGAGAAAACCAGAAGGTCCCTCTGGATGCCTGCACTAAGGAGGAGGCCCACTGGACACTGCAGAGGTGCCACGGGACCATCAAACTGCACTTCAGGTCCAACCATGATGGCTACCGGAGGCTGCTGAAGGAGCTGGAGGATGGCTCCATGGTGTCGGGGGATTCCTTCTACATCCGGGTCAACCTGAACGTCTCGGGTCAGTCGGACAACTGTTCCCTGAGTGTGAAGTGTGACGACATCGTGCACGTGCTGGACACCCGGCACCAGGACCGCTGCGAGTGGCTGTGCGCGCGGGTCGACCCATTCACCGACAAGGATCTGGAGAAAGGCACCGTGCCCAGCTTCTCCAGGGCTCAGCAGCTGCTCCTCGTGAAGATTCAGAAGCTGATGTGCAGAGGGAGCCGAGACGAGACGGACAACCTGCGCAGCTTGCGGACTACGTTACAACCTGAGGAGTCTCCCCCTGCCCCGGACCCCAAGTCCAGCCCCCGTCTCTCCAGGGCGGGCTTTTTCATTGGGCAGATCTTACAGTTTGTCAGCAGGACTGAGAACAAGTACAAGAGGATGAACAGCTCAGAGAGGGTGCGGATCGTCAGCGGAGGGACCTGCACGATCCCGAGGCCCAGCTTCGAAACCGTGAAGCTGGATGCGGCAGACTCGGACTCTGAGAACGACCTGAACAAGAGCCTGAACCTGATCCCCTACAGCCTGGTCACCAAACACCACTGCCAGCGCAAGAGGCCCGTCCTCTTCGCCCCCAACGCGCTCGCCAAGACCATCGTGCAGAAGTTCCTCAACCTGGGCGGGGCCATGGAGTTCAACATCTGCAAACCAGACATCCTGACCAAGGAAGAGTTCCTGCAGAAGCAGAAGATCGAGCCGATCATATATTCCAAGGAGAAGCACGCCAACACCTATGAGTGCATCACCACGGAAAACATCGAGGCTGTCGCTGCCAAGAACAAACACTGCCTCCTGGAAGCTGGGCTCAGCTGCACAAAGGACCTGATCAGAAGAGAGATCTATCCCATCGTCATCTTCATCAAAGTGTGTGAAAAGAACATTAAGAAGTTCAGGAGGCTGCCGTTTAAGCTGGACTCCGAAGACGAGTTCCTGAAGATGTGCCGGGCGAAGGAGAAGGAGCTGGAGGCGCTGCCCTGCCTCTACGCCTCGGTGGAGGCCGACTGCTGGAGTGGAGTGGAGGACCTGCTCAAAGTCATCAAGGACAAAATCCTGGAGGAGCAGAAGAAGACGGTGTGGATCGAACAGGACCTCCTGTAGCCGCGGCGGCCGTGCAGGCGAGAGGACGTCAGGGGTGCGGCTGAACTGGGGAAAGGCAGCAGGGGGTTTCAACAgggaagggtgggggggttgttacCTGTTGCTTCTGCTGGGCCTGGCTTTCTGACTGAGGGGGAAGTTGGTGAACTCTGCACTGAGATGCACAGGAAGTGAGTGTGCCACAGCTGAGCGCAGCCAGAGCGCCTGAGCGCAGCCAGAGCGCCGGAGCTCCGCTGACTTCCACACAACCAAGGACCAGGTCTGAGCTGTGTGCCAAGGGGAGAGCTCTCCACCGCCCAACACCGCAATCAGCCGAGGATGCCGGGCGGCGAGGGGAGTGGATGCTGCTGAGAGGAGAGGGACGTTCACTGAAAATCTGAGACATATTTGTaccaaaatattttgcaattaaactTCACCCCGTACCTAAGAG

Function

NR:

description
PREDICTED: caspase recruitment domain-containing protein 11-like

GO: NA

KEGG:

id description
K07367 CARD11; caspase recruitment domain-containing protein 11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018044 True 4006 mRNA 0.59 24 391725 418680

Neighbor

gene id symbol gene type direction distance location
AMCG00018038 NA coding upstream 362039 25688 ~ 29686 (+)
AMCG00018045 gna12,LOC106593785,LOC106535814 coding downstream 10373 429053 ~ 430631 (+)
AMCG00018046 gna12,gna12a,LOC107674729,LOC107753491,LOC107703403 coding downstream 21510 440190 ~ 445050 (+)
AMCG00018043 gna12,gna12a,LOC107758336,LOC107703403,LOC107674729 coding downstream 46825 465505 ~ 467994 (+)
AMCG00018051 eif3b,eif3ba coding downstream 71439 490119 ~ 499466 (+)
AMCG00018050 NA coding downstream 82862 501542 ~ 513021 (+)
G114018 NA non-coding downstream 50108 468788 ~ 472124 (+)
G114056 NA non-coding downstream 134530 553210 ~ 553504 (+)
G114205 NA non-coding downstream 744212 1162892 ~ 1178095 (+)
G114237 NA non-coding downstream 848160 1266840 ~ 1268893 (+)
G114253 NA non-coding downstream 871875 1290555 ~ 1291851 (+)
G114053 snn,LOC107703342,LOC107564698 other downstream 156580 575260 ~ 579704 (+)
G114123 NA other downstream 358703 777383 ~ 794790 (+)
AMCG00018072 LOC107720077 other downstream 452641 871321 ~ 889033 (+)
G114219 NA other downstream 801099 1219779 ~ 1220216 (+)
G114320 adap1,LOC108228240,LOC107388258,LOC102218716 other downstream 1529161 1947841 ~ 1949593 (+)

Expression


Co-expression Network