AMCG00018048


Basic Information

Item Value
gene id AMCG00018048
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 473096 ~ 481320 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018048
ATGCTGCAGCTCCGCCGGGGCCAGGAGTACTGCGTGGGCCCCCGGGCGCTGAGGGAGGCTCTGGTCTCCCGTGATGAGGCGCTGAGGGCCCTGTATGGCCGCTCCTTCTCCAGTACCGAGAGGCTCTTCCTGTCCGAGGCCTACAACCCCGCTAGGGCGCTCTTCAGGACCCTGTTGATCCGGACAGCCTTTGATTGGCTCggaGGTGGAGCGAAGGCAGTGTTGGTTGTGTTGTCAGATGTGGCCGCGGAGGGGCTGGGGCAGGAGGTGGTCTTCTTCCTGGACGAGCTGAAGTCGTACCTGGAGGCCTTCTTCCCGGGGCTCAGCGTCCGGTTCCTGCCGTCCATCTCCTCGACTGACATCAGGTATGGTATCCTGAGGCACCTGAAGAGGCTGAAGCCACAGGACGCGCTGTGTGTGGTGGGCCTGACGTTCCACGACCTTTACCCCTGCGACAGCTGGAACTACACCTTTGGGAAATCGGCCAGCGAGATGGGTCAGTGTCACGTGGCCGGGCCGGGCTCTGCTGGGTCAGTGTCACCTGGCTGGGCTCTGCTAAAGCGCCGCACCCTGCTGGCGGTGGGGGTCTGCAGCTTCTCAAGGTTTTCCGGGGGCTCAGTGGAGGAGCCGAGCGTGGGGGAGGCGGACCGCAGCGCCGGGGGCAAGGAGGAGCGTGGGCGGCTGCTGGACTTCTCCCTGAGCGACCTGCTTCAGTGCTGCAAGgtGCTCAGTCACGAGGTGTGCCACCTGGTGGGATTGCAGCACTGCCGCTGGCTGCGCTGTGCCATGCAGGGGGTGACCAGCCGGGACGAGCTGTACCTGAGACCTGCGGACCTGTGTCCTGTCTGCCTGCGCAAACTGCACCTTGCCCTGCCCTTCTGCCTCGTAGAGCGCTACCGGcgGCTGCAGGCCTGGTGTCGCAGCGTCTGCCTCTCTTGGGGCCCTCAGGGGGGCAGCGGCCGTGTGACCTCAGAGGACCCCCTGCTGTTCAGCTCGGACTCGGGTGTGTCCTGTGAGAACCTGTCCTTGTCGGCCGCCCTGGAGCCCAGCAGCCTGGAGACGGACAGCCGGGAGGCGTCCCTCGCTCTGGACGGGGAGGAAGAGGGGCGCCCCCCGACCGCCGCCTCCGCCTCCACCTCCGCCTCCGCCTCCGCCTCCGCCTGGCCCTGTCCCCCCCAGGAGGAGGTGAGGGTCCCGTCCCAGTCACTTGCCACCCCCCTGCAGGACTACGCCTCGTGGCTGGACTCCTGCATCGCCACCCTGCAGAGGGGAGGGGACCCGGAGGACGAGCTGTCCCGGCTGGACGGGCTGGTGGACGCTCTGCCCCCCCCCAGGGCCCCCCTGGACCGGGCGCCCGCCCTCAGGGTCTCACTTGAGCCCCCCCGGCAGGACCGGCGGCTGAGGACTTATAGCCCCACACAGCGCCGCTCGGATGGGTCAGCCGGCTCCTCCTCAGCGCGGTCGGCGGGTGCGTGTGCCGGCCCTGCCTGCCTCGATCGCTGA

Function

GO: NA

KEGG:

id description
K06974 amzA, AMZ2, AMZ1; archaemetzincin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018048 True 1503 mRNA 0.68 7 473096 481320

Neighbor

gene id symbol gene type direction distance location
AMCG00018042 sdk1a,sdk1,LOC105890716 coding downstream 273861 195021 ~ 199235 (-)
AMCG00018039 NA coding downstream 344722 45315 ~ 128374 (-)
AMCG00018041 NA coding downstream 430009 37682 ~ 43087 (-)
AMCG00018040 NA coding downstream 450741 9689 ~ 22355 (-)
AMCG00018047 NA coding upstream 2717 484037 ~ 489046 (-)
AMCG00018054 NA coding upstream 55358 536678 ~ 537994 (-)
AMCG00018056 grifin,LOC107758328,LOC107592780 coding upstream 65466 546786 ~ 551240 (-)
AMCG00018055 NA coding upstream 77202 558522 ~ 565582 (-)
AMCG00018063 NA coding upstream 98580 579900 ~ 590822 (-)
G114030 NA non-coding downstream 972 468917 ~ 472124 (-)
G114044 NA non-coding upstream 17007 498327 ~ 499518 (-)
G114166 ppl non-coding upstream 397991 879311 ~ 889088 (-)
G114179 glyr1,LOC107721499,LOC107688117 non-coding upstream 421000 902320 ~ 903843 (-)
G114183 NA non-coding upstream 431911 913231 ~ 913641 (-)
G114213 NA non-coding upstream 681570 1162890 ~ 1166493 (-)
G114021 gna12,gna12a,LOC107674729,LOC107753491,LOC107703403 other downstream 30672 441085 ~ 442424 (-)
AMCG00018074 NA other upstream 296067 777387 ~ 800471 (-)
AMCG00018077 NA other upstream 440958 922278 ~ 926739 (-)
AMCG00018113 NA other upstream 1503829 1985149 ~ 2006636 (-)
AMCG00018111 abca3,LOC102775623,LOC102307646,LOC107742093 other upstream 1525586 2006906 ~ 2067584 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other upstream 1800380 2281700 ~ 2288862 (-)

Expression


Co-expression Network