AMCG00018049


Basic Information

Item Value
gene id AMCG00018049
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 516536 ~ 520955 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018049
atgtcatCTCCCAGGCTTCCTCACATCCAAGTTGTCATCCTGTCAGTTGAGCTCCAGAAGCGGATGGCTGGGTTTCCTGGGCTCTCAGACTGGCACGATGGTTCCTCCCGGGGGGCAAAGATAGAACCGGAGAGTCGAGATACAGAATGGAAGAAGAAACCCCTTAAAGGACTGGATACGATGGGGAAGTCAAGACTTTTTCGCATCTCCCTGATCCTGGGCTCCCTGTTCATGATCCTGCTGATCATAATCTATTGGGACGATGTGGGAGCCACCCATTTCTACCTTCACTCCACCATGTCGGGGCCTCAGTCTTCGCACCGGCCCTCAGAGAGCCACTCCGTCCCCAAACTCAAGCCCGACAGGGACAAGGAGCCGACCTTCCTGTCGGACATCGACGCATTCATCAACCAGTTCCTCGAGGCCACCTCCGAGCCCAGCGCGCTGCCCAGGGCGGACAGCAGCCAGAGGGCGTCGCAGGAGGCGTCGGGGGAGTCCAAGCGGCCAGAGGAGGAGCGCTACGTGCCACCGCGCACCTGGAAGGTCCACTTGACGCCGATAACACTGGAGCGGACGCAGGCgcaggagaggaggaagcagctgctgcagcagatCTGTCACAACTCCTCCCTGGACTTCCCCGGGAAGAACAGGACCTTCGACGACATTCCCAACAAGGAGCTGGACCACCTGATTGTGGATGACCGGCACGGCATCATCTACTGCTACGTGCCCAAGGTGGCCTGCAGCAACTGGAAGCGCATCATGATCGTGCTGAGCGAGAGCCTCCTGAACAAGGGCGTCCCCTACCAGGACCCCCTGGACATCTCCCCCGAGGACGTGCACAACAGCAGCCACCACTTCACCTTTAACAAGTTCTGGAAGCGCTACGGCAAGTTCTCCAAGCACCTGATGAAGATTAAGCTCAAGAAATACACCAAGTTCCTGTTCGTGAGGGACCCCTTCGTCCGGCTCATCTCCGCCTACAGGAACAAGTTTGAGCAGGCCAACGAGGACTTCTACAAGGACTTCTCCGTGGTGATGCTGAAGCGCTACACCAACCACAGCGACCCGCCCGCCTCCGTGGTGGAGGCCTTCGCAGCCGGCATCCGCCCGTCCTTCTCCAACTTCATCCAGTATCTGCTGGACCCTCAGACGGAGAAGGAGATGCCCTTCAATGAGCACTGGAAGCAGATGCACCGTCTCTGCCACCCCTGCCAGATCAACTACGACTTCGTAGGCAAGCTGGAGACGCTGGACGAGGATGCCGAGTATCTGCTCCGGCTTCTCCGTGTTGACAACATCGTCCAGTTTCCCCCAGGCTATCGCAACCGGACTGACAGCAGCTGGGAGGAAGACTGGTTTGGGAGCATCCCCCCGCAGTGGAGGAGGGAGCTGTACAATCTGTACGAAGCGGACTTCACAATGTTTGGGTACTCGAGACCCGAAAAACTCTTACACGAATAATGgcctttaaaaggaaaaaggtgtttttaaaaaggacatTCTTTTGTAACCAGATCTTCCTGTATTCATGTCTTTCTGTCCTGTGCTGCCCTGTCCTTGAGGGTCTCGAAGAAATAGGAATAGGAAATGGCAGGACTCGCTTTATATCTGCTCTGTGTGGGTCTCAGTCTGACTCTGCATGTGATAGTTTTTAATGAATCTTGCAAgatacttgtttttattttccctcttctcatgtattttatttagaacaACGCAAAAGGGACACAGTGTTTATATCTGCGCTTCGGCAGGAGCGAGCGATTGTGCAATTGAAGTCAGAACGACAACTTCTTACTGTCTGGGggggataaaaagaaaaaaagttacaaatttGTCCAggaaaaggaacattttaatatatttatgtataacaGTAATTGCATATAGGCTTTGTGCGATGTGTTACAATCTGTCTTGGATAAGGATGCTAATCAGTGTGCGTAATCCAGCCAGCCGACATAAGAGAGTCCTTGTTTTGAACACGCAAACACGGGAGTTTGAAACTGTATTTGCTGGGTTGAACAGATTGTAGCAAAACCCCGTCCGGTTTTAAACAGAATGCCTTTTGCAcagaatgtatgtttaaaatctttcagtttaaaaaaaaagacaccacaATTTGTTTCATTACAAATGTGAAGCTGTGTAGGAAATCAAAAGATAggcgtttattttattttccttattccTCGTCAGTGTTATGTTTGCTTGCCATTGACACTCCCAGGAGAGGCCTGTTTTCAGGGCCTGTGCTTTTGTAAGACAGTCCTTAAATTGCCTAAAACTCAGGGGAGGAATAAACAGCCTGAGTTGTGGGACGACAGTGTGGAATCAGTCTCTGGGCTACAGGGCCGGAGGTCTCCGAGAAAAGGAACGTTTTAATGCCAAGACGTATTTTTATAAGTTCATTTAAGATTAAGAAAAAGGGAAATCTTTCTTAAGCaaggaaaagtattttaattagtattaaaacATAGGAGGAGAATGTATGCTGTCATGTGTCAAGTGTTATTAGACTGAGCTTTGGGTTTTGTTGTGTAGAATTGTATGTTTTGTCTTGTATTTGTGTTGGTTGTCTTGGCTCTGTTTTCCACCTCTTTTGCCTAGATCTGTTTTAATGTGGTTTCTTCCCAGCGTCTGCAGGGCTGCGGCCCCGTTGTTGCAGACATTCCCCTCTGTATCGCTCTGTGATAAGAGGCTCACACTCGGCATACAAACAGTGAGGCTCGCTCCTCTCAGTCACACACTATtggcatgattttcaaaaggggtGCGATTGTTACTAGTGTtgttatgatgtatttattagccGCCACCCtaatccaaggtgacttacagtttacacaagaaacattttaaagcattagaAAAGTGCAGTATTACAATCAGCACACAATACAATAAGCGCACAATCTCttacaatgagctaacaagtgttGACAAAACTATAAGTGCTGATATAGTGCGTAAGGAAGCAAGAAGTGACTAGTAAAGCCTGACTCTTATGATCCACTCACTCCATGTGTTGAAAGTGGATTCttgaatatttttataaaaccaTTTGAAATGACTCCATCCCTGTGACCCCCCTGAGGTTTGAGAAAAGGCCACCGTCTTGTTCATCCCCTTTTGAAAATCCGACCCAGCTGGGTCTTCCCTCACGGCTCCGATGCCCAGTCTGGATCTGAGCTGAACCGGGTTGCCTGGGCTGAGTGTGGTGGAGCTGAGATGTTTGACCAAAGACAGACTTCCTGTCCCCAGCGGAGAACAGGTTTGCCAATTCAACTGTTTCACCCCCAGAATTATGTTCGGAGACAAtaagttattatttatgtcaGTATTATTTAATACGTtacaaatgtggaaaagtcatgcaagaatacaaataaagctCACTGCATGGAGTTGGccattacagttttgtttttgtgaatttactaattaaaaaaagtgaacCGTA

Function

GO:

id name namespace
GO:0016051 carbohydrate biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K04742 CHST12; chondroitin 4-sulfotransferase 12

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018049 True 3469 mRNA 0.48 3 516536 520955

Neighbor

gene id symbol gene type direction distance location
AMCG00018053 NA coding upstream 2799 513340 ~ 513737 (+)
AMCG00018050 NA coding upstream 3515 501542 ~ 513021 (+)
AMCG00018051 eif3b,eif3ba coding upstream 17070 490119 ~ 499466 (+)
AMCG00018043 gna12,gna12a,LOC107758336,LOC107703403,LOC107674729 coding upstream 48542 465505 ~ 467994 (+)
AMCG00018046 gna12,gna12a,LOC107674729,LOC107753491,LOC107703403 coding upstream 71486 440190 ~ 445050 (+)
AMCG00018057 NA coding downstream 54149 575104 ~ 575385 (+)
AMCG00018052 snn,LOC107703342,LOC107564698 coding downstream 57093 578048 ~ 578311 (+)
AMCG00018060 NA coding downstream 83375 604330 ~ 609917 (+)
AMCG00018061 LOC106607234 coding downstream 91534 612489 ~ 615795 (+)
AMCG00018062 NA coding downstream 102023 622978 ~ 637087 (+)
G114018 NA non-coding upstream 44412 468788 ~ 472124 (+)
G114056 NA non-coding downstream 32255 553210 ~ 553504 (+)
G114205 NA non-coding downstream 641937 1162892 ~ 1178095 (+)
G114237 NA non-coding downstream 745885 1266840 ~ 1268893 (+)
G114253 NA non-coding downstream 769600 1290555 ~ 1291851 (+)
G114274 NA non-coding downstream 1012520 1533475 ~ 1534982 (+)
G114053 snn,LOC107703342,LOC107564698 other downstream 54305 575260 ~ 579704 (+)
G114123 NA other downstream 256428 777383 ~ 794790 (+)
AMCG00018072 LOC107720077 other downstream 350366 871321 ~ 889033 (+)
G114219 NA other downstream 698824 1219779 ~ 1220216 (+)
G114320 adap1,LOC108228240,LOC107388258,LOC102218716 other downstream 1426886 1947841 ~ 1949593 (+)

Expression


Co-expression Network