AMCG00018050


Basic Information

Item Value
gene id AMCG00018050
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 501542 ~ 513021 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018050
ACaccccagacagacagacacacacacacacacaccccagacagacagatacacacacacacgcacacacaccccagacagacactcacacagacacacacacacaccccagacagacactcacacagacacacacacacaccccagacagacacacacacacccacaccccagacagacacacacacacccacacacacccacaccccaGACAGACGAGCTGACACACACCCGCGGACCCCCACTCCCACACGGCTGCACAGAGACCCCGGTCTTATTATGAAGCAGGAAGACTGGCTGCGCCGGACACAATAAAGCCTGTTCAGATGCTCACGTAGTCGTATGGATTGAGACAAAAGTGTGAACgtgagaagaaaacatgaaaacgcTGGCCGGAGAGTCCAAGGACCAGCAGCTCATGCCTGACCCCCGTTGCCTCGTGTCCCCGGCACAGGTGGCGATCCGTATCCGACCCATCAGTGATGCCGAGGTGGAAGAGGGTGCTACGGTCGTGGCCCACAAGGTGGATGATCAGATGGTGGTTCTGATGGACCCCTGCGAGGATCCTGTTGACATCCTGAGAGCGAACCGATCCAGAGAGAAGACCTTCATGTTCGATTTTGCGTTCAACTACACGGCGTCGCAGGAGGATGTGTATGTCGGCACCACCCGGAGCCTGATAGAAGGAGTGATCTCGGGGTACAACGCCACGGTGTTCGCCTATGGGCCGACAGGAGCCGGAAAAACCTTTACAATGCTGGGGACAGACGCCCAGCCAGGGATCTACATCCGCACCTTAAACGATCTGTTCCGGGCCATCGCGGAGGGCAGTGAGGAGATGGACTACAGTGTCTACCTGTCCTACCTGGAGATTTACAATGAAATGATTCGCGACCTGCTGAACCCAGCCTCCGGCTTCCTGGAGCTACGGGAAGATGCCAAGGGTGAAATTCAGATCACGGGCATCACCGAGTTCTCCACCAACAACGCACAGGAGATCATGCAGCTCCTGACCAGAGGCAATAGGCAGCGAACCCAGGAGCCCACGGCTGCCAACAGGACGTCCTCGCGCTCCCACGCCGTGCTGCAGGTCCGGGTGAGGCAGCAGCGCCGCCTGCGGGGGCTGAGCGAGGAGGTGCGTGTGGGCAAGCTGTTCATGATCGACCTGGCCGGCACCGAGAGGGCCTCACAGACCCTGAACCGAGGGAAGAGGATGAAAGAAGGGGCCCATATCAACCGCTCCCTCCTGGCCCTGGGCAACTGCATCAACGCCCTGAGCGACCGGGCCGGGAACAGGCCGCACTTCGACTCTCTGGGAGGGAACAGCAGGACGGTCATGATTGCTCACATAAGCCCCGCCAGCATGAACTTCGAGGAATCCAGGACCACTCTGATCTACGCAGACCGGGCCAAGAACATCAGGACCAAGGTGAAGCGCAACCTGCTCAGAGTGACCTTCCACATGACGCAGTACTCGAGCATCGTGGCCGAGCTACGCAGGGAGATCGAGCGGCTGCAGGCCAAGGTGCAGGACCGGGGCTCGGAGCACCGGAGGGCGGGAGAGAAGGCCGACATCCGcgaggtcagagCCGAGGTGCAGCAGCTCTCGGCACAGTACAGCCGGGGGGAGGTGAGCCGGCTGCGGGAACAACTGGTCAGCGCCTTCCGGGAGCAGATGGAGATCCGCCGCAGCCTGGTGGAGCTGGAGAACTCGAGCATGGAGCTGCACATTGACACGTCGCGCCGCCTGCTCACCATCGCGGACTGGGAACGGGAAAAGGCACGGTGTGCCCGGAAATGGCAGGAGGAGAGGAACACCGAGAAGAGGGACAGAGgcaaggaggaggagagggagagcgggAGCGAGGAGACGGCGGCGCCGGAGCCCCCCGAGGTGACGGCGGCGCGGGAGGAGATTGGCACACTGCTGGCAGAGCAGAGGAGGACAACAGCGCTGAAGGTGGGGACTGATGATGAGTGGAAGGCGGAGCTGGAGGACCGGCTGGCCGGCATGCGGCTGAAATCGTCGAAGGTTGAGGAGCTGCTGCCGCGGCGCATGGCCAGCGAGGAACAGCGCGAGGTCCTCACCCTGCTGTGCCGCGTCCACGAGCTGGAGGTGGAGAACAGCGAGCTGCAGGCCTCGCTGCTAGGCCGGGACACGCGCCGGCGGCACCAGGACTCAGTGCTTCAGCACTACGAGCAGCAGAGGGCGCTGTGCCCCGAGATCATCGAGCAGCAGAGGGCGCTGATCGCCGAGCACAACATCCCCATCCCAGAGCGCCTGCAGGAGTTGTACGCACTGTACCTGCACGAGCTGGAGGAGGGCAGCCTGGAGCAGCTGCTGGCACTACACAACATCAGCACTGTGGGGCTGCAGGACTGGCTGATCCTCTCGGTGGCCAAACAGCTGAATCTGGGGGATTTGCTCACTGATCTGGACCAGGAAGAGCTGAGCCCGAGGACAGAACTGCGGCAGGACAGGAAGCCCTACCCACAGGAGCCGCCGCTCCTTCCTGCCCTCGTCGGGGGACCCGAGGGTGACGCCTACCAGGGGCTCAGATCTGGCTCCAAACCTCAGCCGAGGAGAAGAATGGCCATCCCCCTCCCTCCGCTGATCCAGGCGAGGCCCGGCGCGCCCGGCACCGAAAGCCTGCGGGAGATCGCCACGGGCACCAAGAGCATCGCGGTCATCGCTGCCGAGCGCCGCTCCCGCCTGCAGGCCGTGCAGCCCCACCCGCCCGGCCCGGCTCACGCCCCGGAGAGGAGCCTGGAGGAGGGCGAGAGGGCGGCTTCAGAGCCCCGCCGGGCCCCGGGCTCCAGCTCGGAGAGCCTGGCTGCGGCCGCGCCGGACAAGAGGGTCTCGCTTCACGCCCCAGCCGGCTCCTACCCCCGTGCCAAGAGAGACCCCCGGAGAGTGGACAGGCGGGATGACAAGCTGCGCGATCACAAGAGGCGCTCCCGCTCCTTCGAGGCGAGCGGCCAGCGGAAACCCAAGAGCAGCTCCTTCAGGAACGAGGATGTGGGCAGCGTGTCCGACAGCAGGCTGCTCCGCCCGACCCAAAACTCTAACCATCTCTTCCTGCTGAAGAACTTTgggaccccccccaccccccccgcgGCCAGGATCAAGTACCCTGTCTCCCACCACACAGGCAAGGGGCCGCAGTCTGCAGGGCCACGCTGA

Function

GO:

id name namespace
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018050 True 3184 mRNA 0.63 18 501542 513021

Neighbor

gene id symbol gene type direction distance location
AMCG00018051 eif3b,eif3ba coding upstream 2076 490119 ~ 499466 (+)
AMCG00018043 gna12,gna12a,LOC107758336,LOC107703403,LOC107674729 coding upstream 33548 465505 ~ 467994 (+)
AMCG00018046 gna12,gna12a,LOC107674729,LOC107753491,LOC107703403 coding upstream 56492 440190 ~ 445050 (+)
AMCG00018045 gna12,LOC106593785,LOC106535814 coding upstream 70911 429053 ~ 430631 (+)
AMCG00018044 LOC107592484 coding upstream 82862 391725 ~ 418680 (+)
AMCG00018053 NA coding downstream 319 513340 ~ 513737 (+)
AMCG00018049 NA coding downstream 3515 516536 ~ 520955 (+)
AMCG00018057 NA coding downstream 62083 575104 ~ 575385 (+)
AMCG00018052 snn,LOC107703342,LOC107564698 coding downstream 65027 578048 ~ 578311 (+)
AMCG00018060 NA coding downstream 91309 604330 ~ 609917 (+)
G114018 NA non-coding upstream 29418 468788 ~ 472124 (+)
G114056 NA non-coding downstream 40189 553210 ~ 553504 (+)
G114205 NA non-coding downstream 649871 1162892 ~ 1178095 (+)
G114237 NA non-coding downstream 753819 1266840 ~ 1268893 (+)
G114253 NA non-coding downstream 777534 1290555 ~ 1291851 (+)
G114274 NA non-coding downstream 1020454 1533475 ~ 1534982 (+)
G114053 snn,LOC107703342,LOC107564698 other downstream 62239 575260 ~ 579704 (+)
G114123 NA other downstream 264362 777383 ~ 794790 (+)
AMCG00018072 LOC107720077 other downstream 358300 871321 ~ 889033 (+)
G114219 NA other downstream 706758 1219779 ~ 1220216 (+)
G114320 adap1,LOC108228240,LOC107388258,LOC102218716 other downstream 1434820 1947841 ~ 1949593 (+)

Expression


Co-expression Network