AMCG00018054


Basic Information

Item Value
gene id AMCG00018054
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 536678 ~ 537994 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018054
ATGAACTCCTCTCTGTCTGCCCCCGGTGCGTGGCTGCAGTATTTTCAGCTAGCAGCGTTGGAAAACCGCTCGTCTGGAAGGGCGGGCAACACGAGCGCCGAGTTCGAGCTGGACAGCTTCCTTCTCACCATCAGGGAGCCCACCACCATCACCCTGACTGTCATGTACGTGCTGTCCTTCATCGTGGGCTTCGTGGGCAATGTCATGTCCATCAAGGTGCTGACCAACAAGCGCAGCAAGAGGCTGCCAGGCGTGAGCGCCACCCACAGCCTGCTGGTCAACCTGGCCGTGTGTGACCTCATGGTGGTCTGTGTCTGCATGCCCATCACTCTGGGCAACAAGATCTACAAGGCCTGGGTGTACGGAGACTTCCTGTGCCGCGCCGTGCCCTTTACCCAGGCTGTGTCCATCTCTGCCAGTGTCCTCAGCCTCACCGTCATCAGCGTGAACCGCTACTACAGTGTCCACAGCCCGCTGAGCGCCCGCTCCTTCTTCACCTGCAGGAAGATATTCTGGACCATCGTGATCGTGTGGCTGCTGTCCTCCGGGATCTGCCTGCCCCTGATCTTCATGAACAAGCGTGACGAGATCCGGCTGATAGAGGACCTGCCCTTCGTGTTCCCCGTGTGCAGAGAGACCTGGCCGCAGGCTAAGCTGAAGCAAGTGTACAATGTCCTGCTCTTCTGCACCCTCTACTGCCTCCCCGTGACTTTCAACCTGGTCATCAGCTTTCTGACCGGCCGCAAGCTCTGGAGCACCTCCCGCAACTTCAGGGAATTCGATTCCCGCAGCCAGATCCTGCATTCCTCCAGGCTGAAGATGCGGAAGAAGATCGCCAAGATGGTGGTGGCCCTGGTGCTTCTGTTTGCGGTTTCCTGGCTCCCTCTCTACCTGGCCGACATCTGGTTGGACCAGGAGGAGCCCGCGCCACCCTGGGTCCTGCAGCTCCGGCCCTTTGCCCAGTGGCTGGGACTCACCAACTCCAGCCTGAACCCCATCTGCTACTGCTTTGTGGGAGACCTGTACAGATCTGCCAAGGAGATTAAGAGCCGCTACCACAGGAGGCTTATCTCCTTCTTCAGCTTCTCCATTTCTGAGGAGTCCTCGTCCTCCTCTGTTCCCAAACTGTTCACATTCAGGAAGCCCAAGCAAAGGTTGCCCAGGGAGGCGATCAGCAATGCGTCGGTGGTGGACGACAGTCTCTCTGACGGCTGCTTCCACCCCGGCAGGAGCGAGACTCTGCTGGCCCACGTGCCCCTGCGCTCTTTCTCAGCCGGTGAGGAATCCAGGGGCAGATCTGATCAGACGctgctgtga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018054 True 1317 mRNA 0.59 1 536678 537994

Neighbor

gene id symbol gene type direction distance location
AMCG00018047 NA coding downstream 47632 484037 ~ 489046 (-)
AMCG00018048 NA coding downstream 55358 473096 ~ 481320 (-)
AMCG00018042 sdk1a,sdk1,LOC105890716 coding downstream 337443 195021 ~ 199235 (-)
AMCG00018039 NA coding downstream 408304 45315 ~ 128374 (-)
AMCG00018041 NA coding downstream 493591 37682 ~ 43087 (-)
AMCG00018056 grifin,LOC107758328,LOC107592780 coding upstream 8792 546786 ~ 551240 (-)
AMCG00018055 NA coding upstream 20528 558522 ~ 565582 (-)
AMCG00018063 NA coding upstream 41906 579900 ~ 590822 (-)
AMCG00018065 NA coding upstream 53799 591793 ~ 609889 (-)
AMCG00018067 NA coding upstream 79217 617211 ~ 622245 (-)
G114044 NA non-coding downstream 37160 498327 ~ 499518 (-)
G114030 NA non-coding downstream 64554 468917 ~ 472124 (-)
G114166 ppl non-coding upstream 341317 879311 ~ 889088 (-)
G114179 glyr1,LOC107721499,LOC107688117 non-coding upstream 364326 902320 ~ 903843 (-)
G114183 NA non-coding upstream 375237 913231 ~ 913641 (-)
G114213 NA non-coding upstream 624896 1162890 ~ 1166493 (-)
G114264 NA non-coding upstream 730299 1268293 ~ 1268816 (-)
G114021 gna12,gna12a,LOC107674729,LOC107753491,LOC107703403 other downstream 94254 441085 ~ 442424 (-)
AMCG00018074 NA other upstream 239393 777387 ~ 800471 (-)
AMCG00018077 NA other upstream 384284 922278 ~ 926739 (-)
AMCG00018113 NA other upstream 1447155 1985149 ~ 2006636 (-)
AMCG00018111 abca3,LOC102775623,LOC102307646,LOC107742093 other upstream 1468912 2006906 ~ 2067584 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other upstream 1743706 2281700 ~ 2288862 (-)

Expression


Co-expression Network