AMCG00018055


Basic Information

Item Value
gene id AMCG00018055
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 558522 ~ 565582 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018055
CGTGATTGCTGTGCAGTATGTGTCAGCTCGGGCGCTCGGGGGAGTGCGCTGCCAACAGCGCCGAGCTCGTTCATGAAGACTGCGCTGCGGAGACAAACCTCCGGGCGCACCGGGCGGGGCGGTTTTGCGGGGCGGACGGGCTGCTCCGGCTCTGATCGGACTTCTCGTCACAGTCAGAGAGGAAGTGAGGAGGGACTGGGCTGGTTCTGCTTTTCGCATTTCCGCGCTTCTCTGCCGCCGAGAGAGTCGTCCCGCTGAGCAGGTGAAGAACATGGCCGGTGCCAGTGCCCCTCCAATGGACATGCCCCTGAatgcccccctgcccccctcatATGAAGAGGCCGTGAACCACCCGCTCCCGCAGTATGCACCCCTGTACCCCCATCCACAACCCGACTTCAAGGGCAACCCCCCTCCCTACCCAGTGCAACAGATGCCTCCGCCGGTGAGCAGCCCTCCACTCGTGGCGGTGCAGACGGTCTACGTGCAGTCGGCGGTGGTCTTCTCAGACCGCCCGGTGCAGGTCAACTGTCCGACGTGCCGGCAGACTGTGGTCACCCAGCTGGACTTCGGCTCCGGGACGTTGGCCTGGCTCACCTGCGCCGGACTCTTCATCTTTGGTTGTGTGTACGGCTGTTGCCTGATCCCCTTCTGCGTGGACAGTCTGAAGGACGTGACGCACAGCTGTCCCAACTGCCACAGCGTCCTCGGAGTCCACAAGCGCCTATAACGCCGGCCCGCACCCCTGCACGCACCGGCGACCTGGAGAACAATGTTGTGTAATAGGAAGTTGTGCCTTGCACTGTGTAGCTCTTCTGTTTCCCATTTTGCTTTTCACTCATTGGTTGTTTGTTAATTTCTGTTATTTTCCTCCAGGTTAATTGTGTGTGAGGAGAAGCTAGACTGTCAGTTCATGTCACTGTGCCTTGCAGTGGCATAGGGGACCATTCGCATGGACGGATAATGGAAGGATTCTTTGAAGGATATGTATGATAGAActtgtttgtgtttagttttttagataaatatatatatctatgaaACATATTAGCCAGACTGGTttgtaataaatgcaaaaaaagcaTTGTGAAGTAATGTAAGTAGACTGAAACAGAGGCACTGCTTTGGACTGCAGCATGCAGTCAGTTTTCACCTCTGCGTTGGAGGCAGCCTTCACCgctgagcacagagcacagggcAGGGGCGCCGGTCCGTCCGAATCAAACCTGCAGTCGCGTCTCTGTGAATCTCAGCTCTTTGCACTTGTGTGTGAAAGTCTGACAGCAGCAGCCAGGAGCCCCGGACCTCGCCGGTAGCTGAGGAAGGTTTCTGACAGCAAATCACTGTGAAACTGGATTGTATCAAATCCCATAAACCACTGAAGTGAGTCTCTGTTCTGTGTGCCGTTGTCCCCTATCAAAATTTACTTCTGGTAAattcttaattgttttgttagatTTGGTTTTGTCGCTTAATGTTTAAGCTCTGGTTTCACCGGCTGGCTCAGCAAACACAAGGGCTGGGGAACGTGCCTTAGAGACCGGGCCTGAGGAGAGGCCCCAGTTCAGTCCTCCTGTTTGTCCTTTCAGGGGCAAATGCACACCTGAAACTGGGCGTGCCTACACTGGGAGATCTGTGTCACCAAACCAGCAGACGGGCAGGTAGTAAAGTGAACCGCTCTGCAAGGTCCAGAGTCTGTatagttcttattttattttttattggatttaATCAGTAGCTTCATAttcttacttttctttttctgtagaGTTTACTTTTGAAAGTGTAATCCTGTTGTAGTCAGAACCACCTTGTGTCAAAGGGCGGCAGTTCTGAACCTATGACCTCATGCGTGGTGTTGAGTGGGGGGTGCTGTGACGCCAGGCCTGGTTTCCTTTTCTGACGTGGTGATCAGTGATTGTTACTCAGAGCAAATAAGATGTTTGATGACTGTGAACCAGTTAGTTCTGCTCTGTTTACGTGGTTTCTGTCATGTATGCTGTGCTGAACCTCACCTGATTTTACAAGGGCTTCACTTTGAATTCCTACACTGTGGTACTGTGGTTCTACCATTAAATACTACACTTCACTTCTTTAAAGGTAGTTTGGAACACACCTTTACAAATCTATATATCTtggtatatattgtttgtttaaaatcacttttgtatttcattcagtAACTAGCTGATCCTCACCTCTAAGTTCCTGCCAAACCACACTGCTTCCATCCCAGCAGATGGGGCTTGTAGCTCTTCACACATTGCAGCGCTGTAACATTTTTCAGTGATTATACTTTTGTGCATCATTGCATGGTTGGTACCAAGCGCTTTGAGACATCGATGACTCGAGTGTTGCTGATTCACGAAGGTCGTGTTCTGtcctttctctgtgtgaagaggaACACTACTCTTCTGTTTCTGTTATTCGCCTcattaaatgattttttttacaataa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K19363 LITAF; lipopolysaccharide-induced tumor necrosis factor-alpha factor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018055 True 2458 mRNA 0.50 4 558522 565582

Neighbor

gene id symbol gene type direction distance location
AMCG00018056 grifin,LOC107758328,LOC107592780 coding downstream 7282 546786 ~ 551240 (-)
AMCG00018054 NA coding downstream 20528 536678 ~ 537994 (-)
AMCG00018047 NA coding downstream 69476 484037 ~ 489046 (-)
AMCG00018048 NA coding downstream 77202 473096 ~ 481320 (-)
AMCG00018042 sdk1a,sdk1,LOC105890716 coding downstream 359287 195021 ~ 199235 (-)
AMCG00018063 NA coding upstream 14318 579900 ~ 590822 (-)
AMCG00018065 NA coding upstream 26211 591793 ~ 609889 (-)
AMCG00018067 NA coding upstream 51629 617211 ~ 622245 (-)
AMCG00018064 NA coding upstream 85705 651287 ~ 658508 (-)
AMCG00018066 LOC107682913 coding upstream 96667 662249 ~ 667911 (-)
G114044 NA non-coding downstream 59004 498327 ~ 499518 (-)
G114030 NA non-coding downstream 86398 468917 ~ 472124 (-)
G114166 ppl non-coding upstream 313729 879311 ~ 889088 (-)
G114179 glyr1,LOC107721499,LOC107688117 non-coding upstream 336738 902320 ~ 903843 (-)
G114183 NA non-coding upstream 347649 913231 ~ 913641 (-)
G114213 NA non-coding upstream 597308 1162890 ~ 1166493 (-)
G114264 NA non-coding upstream 702711 1268293 ~ 1268816 (-)
G114021 gna12,gna12a,LOC107674729,LOC107753491,LOC107703403 other downstream 116098 441085 ~ 442424 (-)
AMCG00018074 NA other upstream 211805 777387 ~ 800471 (-)
AMCG00018077 NA other upstream 356696 922278 ~ 926739 (-)
AMCG00018113 NA other upstream 1419567 1985149 ~ 2006636 (-)
AMCG00018111 abca3,LOC102775623,LOC102307646,LOC107742093 other upstream 1441324 2006906 ~ 2067584 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other upstream 1716118 2281700 ~ 2288862 (-)

Expression


Co-expression Network