AMCG00018058


Basic Information

Item Value
gene id AMCG00018058
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 667954 ~ 671836 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018058
GCGGCGTGGAGGCGTGAGAGTCAGTGTCGCGGCCAAGTGACGTCAGAGACGCGACGTGCGCAGAAGCGTCGCCACAGGTCGGGGCGCTCACGCACATGTCCGCTGCTTGTGTCTGAATCTGTCCGTGCGCAGCCCGAATGGCCGAGCCCAAGAAGAGGAGCAAGAAGCAGTACAGCAGCTATGGCAAGAGGCACAAGGGCGCCCGGGAGCTGGAGGTGGGCATGCAGGGCATCCTGATCACCTGCAACATGAACGAGCGGAAGTGCACCTCTGAGGCCTACAGCCTGCTGAACGAGTACGCAGACCAGCTGTACGGACCGGAGAAGTTCtcggaggaagaggagggcgGCAGTCATGCGGAGGAGGACGACGACGACCTGGAGGCCGCTCTGCAGAAGGAGGTCCAGCAGCTCCGCAGCTCCACCGCCAAGCGCCAGCGCCGCTTCCAAGCCCTGGAGAGCGGCGCCAACAACGTCATCTTCATCCAGACGCAACATCTTGACCCTGACAAGCTGGTGCACCACATCCTGCAGGACCTCCATTCCACCAAGAAGAAGAAGTCGCGCGTCATGCTCAGGATGCTGCCCGTGAGCGGCACCTGCAGGGCCTTCCTGGAGGACATGGAGAAGTACCTGGCCGGCTTCCTGGAGCCCTGGTTCAAGAGCCCCAACCAGGGCACCTTCCAGATCGTCTTCAAGGCCCGGAACAGCTCCCACGCCAAGAGGGACGATGTCATCAAGGTCCTGGCAGCGCTGGTAGGGAAATTGAATCCGAAGAACAAGGTGGATCTGACCAACCCGGAGTACACCGTCATCATCGAGGTGATCAAGAGCGTGTGCTGCGTCAGCGTGGTGCGGGACTACATGCTCTTCAGGAAGTTCAACCTGCAGGAGGTGGTCAAAGACGAGCACGAGAGGGAGGCCAGGTCGACGGCAGACAACGGCCAGGAGACGTCCCAGAGAAGAGGAGGGGACGCAAGGGCCGCGGAGGATGGCGGGGTGAAGGGGCCGGAGGcggaggagggagggaaggaagcCGTGCCGCAGGAGGAGAGCGCGGCGGCCACGGGGACGGAGTGAGGGATGCCACGCCGAGGGAGGTTTTAAATGTGTGAGCGTGTGAAGCGTCCCCCGCAAGGCGAGGACAGGGCTGTGTCGATGAACCTGCAGATTTAggatgttttgtattgtatgtcaACTTTGACctgatttaaaatgctgtatagtagaattttatttttccccccctttcctGAAATGTCTTCAAAGTCTTTCTAGACGACTTGCATCATCATattcttcctccacttggttgTCGCCGTTATTAACCAGTTGGTTTTATTACCCAGAGAGCATTGCAGGTGTGTGGAAGTGTGCAGCATAACAAACCGCAcaccatcaaaataaaaatggtttggaataattatacttttttaattcaaCTACTTTTCAGCTGTAAATATGAAGTCACTCCAGTCTGTAAAAGACACTTCTTTGTGTCACTAGAGAGCCGGATGCATTTGTCTTGAAGGAACAGCAGATTGTGTCCAGATCTCTGCAGGTGTTTGTTAATAGTGATGagggtttaatttattgaatttgAATAGGGGAGAcactaaatatttttaaaccatcaGTTTAGTGTCTGATTGTCGAtgctctttattttgttttaagtaacaGGATTTTATTATAGTGATTATGTTGGCAACAAAGTCCTTTACCCGCTTACGGTGAAAATTCAGATCTTCACATTCTCCCCAGACTGTAGTCCTGACAGtggacacctctctgtgtgcagGACAGGCCAGGACTGGACAATTGACCCCCGGGACAGGACGGCTCCTTTCTCACGTGATGCTGTTGCTCACACTGCTGTGAAAATCTCTGTGGATCATGTAGTTTGATTTAGTAAGAGCAACAAAATTACAGAAAGCAATAAGGCGTCTCAGAAatgttggtctttttttttaaagctccaGGGTTTCAAAGCTGGTttatggattttgtttgttattatatgttttcaaatgaaatggagtttgtttttgttctgacaGTGtcgtaatgtttgtttttcacttggaTGGAAATATCTGCTTCACTAATGGCCATTGATTTACCTGTGGATGTAAATTCATTTTAGAGAAAAACACTTGAAAGAATGTCATTACCCCCCACACCTTCTGTACTGAGTAAACTATTTGGTTAAAACGGA

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K06963 TAN1, THUMPD1; tRNA acetyltransferase TAN1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018058 True 2217 mRNA 0.51 5 667954 671836

Neighbor

gene id symbol gene type direction distance location
AMCG00018059 NA coding upstream 5838 657682 ~ 662116 (+)
AMCG00018062 NA coding upstream 30867 622978 ~ 637087 (+)
AMCG00018061 LOC106607234 coding upstream 52159 612489 ~ 615795 (+)
AMCG00018060 NA coding upstream 58037 604330 ~ 609917 (+)
AMCG00018052 snn,LOC107703342,LOC107564698 coding upstream 89643 578048 ~ 578311 (+)
AMCG00018068 axin1,LOC107564695 coding downstream 65304 737140 ~ 739283 (+)
AMCG00018070 NA coding downstream 74839 746675 ~ 759719 (+)
AMCG00018071 NA coding downstream 88587 760423 ~ 760701 (+)
AMCG00018069 NA coding downstream 91718 763554 ~ 777290 (+)
AMCG00018075 glyr1,LOC107688117,LOC107590383,LOC107721499 coding downstream 230348 902184 ~ 912776 (+)
G114056 NA non-coding upstream 114450 553210 ~ 553504 (+)
G114018 NA non-coding upstream 195830 468788 ~ 472124 (+)
G114205 NA non-coding downstream 491056 1162892 ~ 1178095 (+)
G114237 NA non-coding downstream 595004 1266840 ~ 1268893 (+)
G114253 NA non-coding downstream 618719 1290555 ~ 1291851 (+)
G114274 NA non-coding downstream 861639 1533475 ~ 1534982 (+)
G114299 NA non-coding downstream 1192721 1864557 ~ 1865570 (+)
G114053 snn,LOC107703342,LOC107564698 other upstream 88250 575260 ~ 579704 (+)
G114123 NA other downstream 105547 777383 ~ 794790 (+)
AMCG00018072 LOC107720077 other downstream 199485 871321 ~ 889033 (+)
G114219 NA other downstream 547943 1219779 ~ 1220216 (+)
G114320 adap1,LOC108228240,LOC107388258,LOC102218716 other downstream 1276005 1947841 ~ 1949593 (+)
AMCG00018105 NA other downstream 1301002 1972838 ~ 1973924 (+)

Expression


Co-expression Network