AMCG00018059


Basic Information

Item Value
gene id AMCG00018059
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 657682 ~ 662116 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018059
ATGTTAAGAAACTGTTATCAGCCATCCCGCTCCGGTACAAGACCTGGAGAAACAGACGACATGGCAACAAAGAAACTGGCCAAGGAGCTGGGCTTGATCAGGAGACGCAGGCGAGCTCCGGGCGGGGGCAGCCGGGCCGCGGCAGTGTCCATTGAATTCCCAGCTGTGCTTCTGAACACGTGCAGCGGGGAGATCGATGCAGAGTTTCACCACTACGTTCAGCCCCAGGAGCACCCCATGCTGTCCGCCTTCTGCACCGAGCTGACGGGCATCACGCAGGGTCAGGTGGAGGCCGGAGTCCCTCTGAGGATCTGCCTGTCCCAGTTCAGTCAGTGGCTCCAGACGCTGCGGCAAGAGAGGAACGTGGTGTTTGCCAGAGAGCCGTCCAGACCAGGGGCAGCTGCGGAGAAGCCATGTGCTTTTGTCACCTGGTCAGACTGGGACCTGGGTGTCTGTCTCCAGTACGAGTGCAAACGCAAGCAGCTCCGCAAACCAGAAGCTCTGAGCAGCTGGATTGACCTCAGAGCCACGTACAAGCTGTTTTATAACCGAAGACCCAAAGGGCTGAACGGCGCTCTGCAGGACCTGGGGATCGAGTTCTCCGGCAGGGAACACTCAGGGCTGGACGACGCCAGGAACACGGCGCGCCTCGCCTGGAGGATGATGTCCGACGGCTGCGCGATGAGGGTCACCAAGTGCCTGGCCGGGGTGCCGCCCACGACGCACCCCCCCGCAGCGCTGCCCCTGGCAGAGAGCGAGAGCAGCGCAGAGGCCCCGCGGCAGCGAGAAGCAGGCAGGGAAGGAGGGAGCGGCAGGGAGAGCGCAGGAGGGAAGCGAAGTCGGACCATCCTGCAGTGGGTGGAATCAGAGGGCCGTCCGGGTCGGCGCCGGTCTGCGGGGGATAAAGAGGCGGCACAGGGACTGAGTGCCAACACTGAGAGCCTCGTCTGCCGCAGTCTGGTGTCTCCCAGGACCCTGCTGCACGGGCTGACCATGCCTGGGCTCCCTGGATGGCGGTCCATGACCAGAACCATGTCTGTGGGGTCAGCGGTGCATGTAAACAGCCCAGCGCCGCTCGGCACCAGCCTGGTGCTGGTCTCCACTACAGTTAACTGCCTCACCGAGACCTCGGAGGAGCACGGCGGTGTGGGCTGTGACTCCGAGACGGTGCCTGTGGACTGGGAGGACTGCCCGCTCTGGCCCGAGACGGATGAGAGCTGTTCGTATGACGCCGTGGCCCTGGAGGACACGGACACGGGCAGCCAGTCTGAGTCTCTGTGGAGCGGCACACACGACGCACAGCCGCCGGGTGACGCGGGTCCAGCACTGACTGAGTCGGACCGGCAGAATCCAGTCGTGTACAAAAGCTCCAACACTACAGTGTACTCTGTTGGCAATGCGTCGCTCTGCCCCGCCAGCCAGTCCTTTAAGACCCCCAGTGTGTGTGCGAGGGTCTTTCACAGCAGCACTCTGTCCAACACGTCCCTCTGCTCAAAACCCAGGATGGCGGCCTGCGGGGGCCGAGACGGGATGCTCTCTCGCCCGGGTCACTACGGGACCGGGGCCTGCGACTCCTTCAGAATCTACCAGGACAAGGACGGCTCTGGCTGCTCGGACAGTGTGGGCCGGACCCCCGTGCCCCCGGGGGTCCTCTCTTCCTCAGTCAACACCAGGgtgtcctcctcttcctcttcctccagcgCTGCCCTGAAGCTCACTCCCCCGCTGTGTGGCTGCGGCCGCCGGGCCCGGAGGATGACCGTTTCCAATGGGGGGCCCAACAATGGCCGGGCTTTCTACAGCTGCCCCGCGGGCAAATCTAGGCCGGGCATCAAGCAGAGCTGCGGCTTCTTCCAGTGGGAGACGGCTCTGGCCCGGCGCGTGTCCCTGACCTCGACCTCTCTGTGTGCCGGGCCGGGCGGCACTCTCGCCGTCTCGAGGGGGAAGGTCCGCAGCGCGGAGGTCTCTCAGCACCGAGGCCTGGGCCTCCGACCGGCACCGAGGACTTAG

Function

GO: NA

KEGG:

id description
K18417 ERI2; ERI1 exoribonuclease 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018059 True 2010 mRNA 0.65 9 657682 662116

Neighbor

gene id symbol gene type direction distance location
AMCG00018062 NA coding upstream 20595 622978 ~ 637087 (+)
AMCG00018061 LOC106607234 coding upstream 41887 612489 ~ 615795 (+)
AMCG00018060 NA coding upstream 47765 604330 ~ 609917 (+)
AMCG00018052 snn,LOC107703342,LOC107564698 coding upstream 79371 578048 ~ 578311 (+)
AMCG00018057 NA coding upstream 82297 575104 ~ 575385 (+)
AMCG00018058 NA coding downstream 5838 667954 ~ 671836 (+)
AMCG00018068 axin1,LOC107564695 coding downstream 75024 737140 ~ 739283 (+)
AMCG00018070 NA coding downstream 84559 746675 ~ 759719 (+)
AMCG00018071 NA coding downstream 98307 760423 ~ 760701 (+)
AMCG00018069 NA coding downstream 101438 763554 ~ 777290 (+)
G114056 NA non-coding upstream 104178 553210 ~ 553504 (+)
G114018 NA non-coding upstream 185558 468788 ~ 472124 (+)
G114205 NA non-coding downstream 500776 1162892 ~ 1178095 (+)
G114237 NA non-coding downstream 604724 1266840 ~ 1268893 (+)
G114253 NA non-coding downstream 628439 1290555 ~ 1291851 (+)
G114274 NA non-coding downstream 871359 1533475 ~ 1534982 (+)
G114299 NA non-coding downstream 1202441 1864557 ~ 1865570 (+)
G114053 snn,LOC107703342,LOC107564698 other upstream 77978 575260 ~ 579704 (+)
G114123 NA other downstream 115267 777383 ~ 794790 (+)
AMCG00018072 LOC107720077 other downstream 209205 871321 ~ 889033 (+)
G114219 NA other downstream 557663 1219779 ~ 1220216 (+)
G114320 adap1,LOC108228240,LOC107388258,LOC102218716 other downstream 1285725 1947841 ~ 1949593 (+)
AMCG00018105 NA other downstream 1310722 1972838 ~ 1973924 (+)

Expression


Co-expression Network