AMCG00018060


Basic Information

Item Value
gene id AMCG00018060
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 604330 ~ 609917 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018060
GAAACATTTGTCAGCTGCTCAGCAATGCTGCGGTTAATTACTACATTGCGGAAGTGAAGGACAACCCGTGTTTCGGGTTTTGTAGAAACAGAGTGCATGCCAGCTGCAGTCGGTGATCTCAGCTATTCTCAGGGCTTGCATAGCTACCTCCattgaatgtgttaaattaatatattaaaactcCAGAACAACGGGCAGACTGGTCTAAGTCTATGCTTTACTGATTGAtcgattatttatttagttagttattgACTGGGTGAGGTTTGTAATCTGGCAGGCAGTTCATCATGAGGAGCGCTTGTCTGCTGGCCCTACTGGCCCTACTTGGcccctgtctctgtctggaCAACGGGCTGGCCCGCACACCGCCCATGGGCTGGCTGGCCTGGGAGCGGTACCGGTGCGACATCGACTGCGACACCGACCCGGACAACTGCATCAGCGAGCGGCTGTTCAAGACCATGGCCGACCGGCTGGCAGCGGACGGCTGGAGGGAGCTGGGCTACCAGTACGTCAACATCGACGACTGCTGGTCCGCCAAGAAGAGGGACGCCCAGGGCCGGCTGGCGGCCGACCCCCAGCACTTCCCCAGCGGGATCAAGGCCCTGGCGGATTACGTCCATGCGAAGGGCCTGAAGCTGGGGATCTACGGAGACATGGGGACCCTGACCTGCGGGGGGTATCCGGGCACCACTCTGGACACAGTCGCTCTGGACGCACAGACCTTCGCAGAGTGGGGGGTGGACATGCTGAAGCTGGACGGCTGCTACTCGAACTCCTCTGTTAAAGCACAAGGCTACCCCAAGATGAGCGCGGCCTTAAATGCCACCGGCCGGCCCATCATGTTCTCCTGCAGCTGGCCGGCCTACGAGGGAGGACTCCCCCCAAAGGTGGACTACGCCCTGCTGGGACAGATCTGCAACCTGTGGAGGAACTACGGCGATATCCAGGACTCGTGGGGCTCCGTGTACAGCATTATCGAGTGGTTCGGGAATCACCAGGACCTCGTGGTCGGTGACTTTGGGCTGAGCTACGAGCAGTCCAAGACCCAGATGGCCGTGTGGGTCGTAATGGCAGCGCCCCTCTTCATGTCCAACGACCTGAGGAGCATCTCGGACCGGGCCAAGGAGATCCTGCAGAACCAGCTGGCCATCGCGATTAACCAGGACCCCCTGGGCGTACAGGGTGCCCGGGTCTATAAGGACGATCACTTCGAGGTGTGGAAGAGGCCTCTCTCCGCCGGGAGGTACGCGGTGGCGGTGGTGCACGGTGCCCAGGACCCCATGCCTCTGCCCATCGCCATCAACCTGGCCAAGCTGTACATCGTGGAGTGTCACCTGGGATACAAGGTGTTTGACGTCTTCGAGTCCCGCCCCATCGGCGTCTTCACGCTCAGTGGGGTCATCTACCTGCGCGTGAACCCCAGTGGGGCGGTGCTGCTGCATCTGGAGCCGCTGTGCCCGCCTGGCAACCCCGCCTGGCTGTGACCGGCAGCACCGCAGGATGGCACCACAACAACACCGCAAGAAACCACAGAAACTCATTTGTTATTGCATTCAGTGCCATTGGCTGACATTTGTAAAGATTATATTTCAGGTGGCCTTACACaagttttatataatgtttaaataaataaatgacttcataaatacataaaa

Function

GO:

id name namespace
GO:0009311 oligosaccharide metabolic process biological_process
GO:0016139 glycoside catabolic process biological_process
GO:0046477 glycosylceramide catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0008456 alpha-N-acetylgalactosaminidase activity molecular_function
GO:0004557 alpha-galactosidase activity molecular_function

KEGG:

id description
K01204 NAGA; alpha-N-acetylgalactosaminidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018060 True 1661 mRNA 0.57 7 604330 609917

Neighbor

gene id symbol gene type direction distance location
AMCG00018052 snn,LOC107703342,LOC107564698 coding upstream 26019 578048 ~ 578311 (+)
AMCG00018057 NA coding upstream 28945 575104 ~ 575385 (+)
AMCG00018049 NA coding upstream 83375 516536 ~ 520955 (+)
AMCG00018053 NA coding upstream 90593 513340 ~ 513737 (+)
AMCG00018050 NA coding upstream 91309 501542 ~ 513021 (+)
AMCG00018061 LOC106607234 coding downstream 2572 612489 ~ 615795 (+)
AMCG00018062 NA coding downstream 13061 622978 ~ 637087 (+)
AMCG00018059 NA coding downstream 47765 657682 ~ 662116 (+)
AMCG00018058 NA coding downstream 58037 667954 ~ 671836 (+)
AMCG00018068 axin1,LOC107564695 coding downstream 127223 737140 ~ 739283 (+)
G114056 NA non-coding upstream 50826 553210 ~ 553504 (+)
G114018 NA non-coding upstream 132206 468788 ~ 472124 (+)
G114205 NA non-coding downstream 552975 1162892 ~ 1178095 (+)
G114237 NA non-coding downstream 656923 1266840 ~ 1268893 (+)
G114253 NA non-coding downstream 680638 1290555 ~ 1291851 (+)
G114274 NA non-coding downstream 923558 1533475 ~ 1534982 (+)
G114299 NA non-coding downstream 1254640 1864557 ~ 1865570 (+)
G114053 snn,LOC107703342,LOC107564698 other upstream 24626 575260 ~ 579704 (+)
G114123 NA other downstream 167466 777383 ~ 794790 (+)
AMCG00018072 LOC107720077 other downstream 261404 871321 ~ 889033 (+)
G114219 NA other downstream 609862 1219779 ~ 1220216 (+)
G114320 adap1,LOC108228240,LOC107388258,LOC102218716 other downstream 1337924 1947841 ~ 1949593 (+)
AMCG00018105 NA other downstream 1362921 1972838 ~ 1973924 (+)

Expression


Co-expression Network