AMCG00018061 (LOC106607234)


Basic Information

Item Value
gene id AMCG00018061
gene name LOC106607234
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 612489 ~ 615795 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018061
GGAAGTGATGCCGGAGGCTTTAACAGCCGGAGTTTAAACCCTCTTAGCAGAGGCGTCCGTCAGCCGCAGCGCACAGCCTGGCCCCGGGATGCTCCCTCTGcgcctcctgctgctgctgccgccgctgCTGCTCTCCGTCCGCAGGGCGGTGCTGTCCCCGCAGAGCTCGCACCGGATCCAGCGGAGGGGCCTGCTGGAACTGGCCGGCGTCATCAAATGCAGCACCGGCCGCTCCGCCATGGCCTACATCATGTACGGCTGCTACTGCGGCCTGGGCGGGCAGGGCTGGCCGAGGGACAAGGCGGACTGGTGCTGCCACAAACACGACTGCTGCTACGAGAAAGCCGAGCTCTCGGGCTGCAAGAGCAAGACGGACAAGTACCAGTGGACCTGCGAGGACAAGGAGGCCGACTGCGGTACTCGTGATACACAAGAGGCCTATTTTGGGCTGAGCGCTGCGGTGAGACGGCAGGACTATCTTGGGGAGCGGAAGAGGCTCCACCGGATGGCAGGGTTGCACTGCCCGGCCACTTCCAGCCCAAATGTTTCCATCGCTCCTGAACCTAACCCCTCATTAGGCCGCGTGGGCGTTGGCTCCCGGTGTGTGGTGCACACCCCGCTCCGCTCCAGCCCTCGCTGTGTGATTTactctgtgctgtgctttgtTTCAGAGTCCGTGAAGGACAAGTGTGAGAAGATGCTCTGCAAGTGTGACCGAGAGGCCGCCAAGTGTCTGCGTAGATCTCCCTACATCCCGAAGTACGCAGTCTGGCCCGACTTCCTGTGTGGATACGATCACCCCACCTGTAACTATTACTGA

Function

NR:

description
PREDICTED: group 10 secretory phospholipase A2-like

GO:

id name namespace
GO:0006644 phospholipid metabolic process biological_process
GO:0016042 lipid catabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004623 phospholipase A2 activity molecular_function

KEGG:

id description
K01047 PLA2G, SPLA2; secretory phospholipase A2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018061 True 820 mRNA 0.62 4 612489 615795

Neighbor

gene id symbol gene type direction distance location
AMCG00018060 NA coding upstream 2572 604330 ~ 609917 (+)
AMCG00018052 snn,LOC107703342,LOC107564698 coding upstream 34178 578048 ~ 578311 (+)
AMCG00018057 NA coding upstream 37104 575104 ~ 575385 (+)
AMCG00018049 NA coding upstream 91534 516536 ~ 520955 (+)
AMCG00018053 NA coding upstream 98752 513340 ~ 513737 (+)
AMCG00018062 NA coding downstream 7183 622978 ~ 637087 (+)
AMCG00018059 NA coding downstream 41887 657682 ~ 662116 (+)
AMCG00018058 NA coding downstream 52159 667954 ~ 671836 (+)
AMCG00018068 axin1,LOC107564695 coding downstream 121345 737140 ~ 739283 (+)
AMCG00018070 NA coding downstream 130880 746675 ~ 759719 (+)
G114056 NA non-coding upstream 58985 553210 ~ 553504 (+)
G114018 NA non-coding upstream 140365 468788 ~ 472124 (+)
G114205 NA non-coding downstream 547097 1162892 ~ 1178095 (+)
G114237 NA non-coding downstream 651045 1266840 ~ 1268893 (+)
G114253 NA non-coding downstream 674760 1290555 ~ 1291851 (+)
G114274 NA non-coding downstream 917680 1533475 ~ 1534982 (+)
G114299 NA non-coding downstream 1248762 1864557 ~ 1865570 (+)
G114053 snn,LOC107703342,LOC107564698 other upstream 32785 575260 ~ 579704 (+)
G114123 NA other downstream 161588 777383 ~ 794790 (+)
AMCG00018072 LOC107720077 other downstream 255526 871321 ~ 889033 (+)
G114219 NA other downstream 603984 1219779 ~ 1220216 (+)
G114320 adap1,LOC108228240,LOC107388258,LOC102218716 other downstream 1332046 1947841 ~ 1949593 (+)
AMCG00018105 NA other downstream 1357043 1972838 ~ 1973924 (+)

Expression


Co-expression Network