AMCG00018062


Basic Information

Item Value
gene id AMCG00018062
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 622978 ~ 637087 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018062
ATGCGGTCACGCACGCCCCCCTCGAGCGACCCCGCACCCCACGTGCGTCAGGCTGCAGCCCGGAAGTGCTCGGCGGCGGAGGTTAAAGGCTGCAGGAGACGCCGCTGCACGCaggctgtttgtgtttgtgcagagATGGAAGTCACCAGGAAAAATTTTAAAGAGAGTTTGAACACCATATACAGCGCCATAGAAGAGGCGGATTTCCTCGCCATCGACGGGGAGTTCTCGGgAATCAGCGACGGCCCCTCCGTCAGTGCGCTGACCAATGGCCTGGACACCCCCGAGGAAAGATACTTCAAATTGAAGAAGcACTCCATGGACTTCCTGCTCTTCCAGTTCGGTCTCTGTACGTTTAAATATGACCCCTCGGAGTCCAGGTACATCATGAAGTCTTTTAACTTTTATGTCTTTCCAAAGCCATTCAACAGAAACTCTCCGGATATTAAGTTTGTGTGTCAAagttCCAGTATTGATTTTCTGGCAAATCAGGGATTTGATTTCAACAAAGTGTTTCGTAATGGGATCCCATACCTCAACCAGGCGGAGGAGGCCCAGCTGAGGGAGCAGTACGAGGAGCGACGCTCGCAGGCCCCCGGCTCCGGCACACCCTCTTTCGTCTCCCCCAGCGCCGGCAAGGACCCGGTCAATGTGCCAGACGAGCACAAGGACTTCATCAACCGAGTCGTGGAGAGAGTGGAGGGGCTGCTGAACAGCGCGGAGAAGAGCAGCGTGGAGCTGGAGCCGTGTCTGGGGTTTCAGAGGAAGCTCATCTATCAAACCCTGAATTGGAAGTATCGGAAGGGAATTCATGTGGAGACCTTGGAAACGGAGAAGAAGGAAAGATACATTCTAATCAGCAAGCTGGATgatgatgaaagaaaaaagaaggaacaacaaaagcaagaaaaggagcagGGGAAGCTCGTGGTCGGCCACAACATGCTGCTGGACGTCATGCACACCATCCACCAGTTCTACTGCCCGCTGCccgagGAGCTGAATGACTTCAAAGAGGTCGCACTGTGCGTCTTCCCCAGGCTTCTGGACACTAAGCTCATGGCATCCACTCACCCGTTTAAGGAACTTATCCACAACACGTCTCTGGCAGAACTGGAGAAGCAGCTGAAAGAAACTCCGTTCAAAACCCCCAAAGTCGAGAGTGCAGAGGGATTCCCCAGCTACGACACGGCCTCAGAGCAGCTCCACGAGGCCGGCTACGACGCCTACATCACCGGCCTCTGCTTCATCTCTATGGCCAACTTCCTGGGCACATTCCTCACCCCGCCAAAACCGCACATCTCTCCCAGATCGAAGCTCATCGAGCCCTTCTTCAACAAACTCTTCCTGATGAGGGTCATAGACATCCCATACCTGAACATCAGCGGTCCGGACTTGCAGCCCAAGAGGGATCACGTCCTCTACGTCACCTTTCCCAAAGAGTGGAAGACCAGTGACCTGTACCAGCTCTTCAGTGCCTTTGGTAACATTCAGGTGTCCTGGATAGATGACACGTCGGCATTTGTGTCGCTGAGCCAGACGGACCAGGTTCAGATCGGTGAGTTGGCCACTTACCGCATTTTCGTTCTCCCTCATGGGTGCTCTAcggTAAACACAAGCCGCTATGCTGAGAGCTACCGGATCCAGACGTATGCAGAGTATGTGGAGAGCCGGCGGGATGAGCGGCCGCAGAGGAGGCGCTGGGCGGAGGACGGCTGGGTGAAGGGCACGCAGTACAGCGCCGTGCCCGCCTACGGCTACaaccagaacaacaacaatgtaatGCTGCCGGGGAAGCGGAGCATCAGCCCCATCCAGGAGGAGCAGGGCTCggaggagatggaggagggCGAGATCCACGCCGACGACACCTACAGCGCCTCCTGGAGCCGTGCCGTGCCGGGCAAGAGCAAGAAGAGCAAGAAGGCTAAGACTGATGctcctgtgcagACGTACGCCGACGTGGTGGAGAGCCGACCGGGCGACGGGTGGCTGAAGGCGCAGTACTCCACCTCGACCAACCTGCCCGGCCTCGGGTTCAACAGCAAGCTGGCCTCGGACAAGAGGAGCATGAGCCCCATCCAGGAGGAGCAGCTGCCCGACGAGCCCGAGGAGGGGGAGATCCCCGCCGGCACGGACGCCTGGAGGCACAGCGCCACCCCAGGCAAGAAGGGCAGGAAGAACAAGAAGAGGAAGACGGAGGGTGCCGACCCCGCCGGCTCCTCCGAGCTGTTCGAAGTGCCACAG

Function

GO: NA

KEGG:

id description
K01148 PARN, PNLDC1; poly(A)-specific ribonuclease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018062 True 2247 mRNA 0.57 25 622978 637087

Neighbor

gene id symbol gene type direction distance location
AMCG00018061 LOC106607234 coding upstream 7183 612489 ~ 615795 (+)
AMCG00018060 NA coding upstream 13061 604330 ~ 609917 (+)
AMCG00018052 snn,LOC107703342,LOC107564698 coding upstream 44667 578048 ~ 578311 (+)
AMCG00018057 NA coding upstream 47593 575104 ~ 575385 (+)
AMCG00018049 NA coding upstream 102023 516536 ~ 520955 (+)
AMCG00018059 NA coding downstream 20595 657682 ~ 662116 (+)
AMCG00018058 NA coding downstream 30867 667954 ~ 671836 (+)
AMCG00018068 axin1,LOC107564695 coding downstream 100053 737140 ~ 739283 (+)
AMCG00018070 NA coding downstream 109588 746675 ~ 759719 (+)
AMCG00018071 NA coding downstream 123336 760423 ~ 760701 (+)
G114056 NA non-coding upstream 69474 553210 ~ 553504 (+)
G114018 NA non-coding upstream 150854 468788 ~ 472124 (+)
G114205 NA non-coding downstream 525805 1162892 ~ 1178095 (+)
G114237 NA non-coding downstream 629753 1266840 ~ 1268893 (+)
G114253 NA non-coding downstream 653468 1290555 ~ 1291851 (+)
G114274 NA non-coding downstream 896388 1533475 ~ 1534982 (+)
G114299 NA non-coding downstream 1227470 1864557 ~ 1865570 (+)
G114053 snn,LOC107703342,LOC107564698 other upstream 43274 575260 ~ 579704 (+)
G114123 NA other downstream 140296 777383 ~ 794790 (+)
AMCG00018072 LOC107720077 other downstream 234234 871321 ~ 889033 (+)
G114219 NA other downstream 582692 1219779 ~ 1220216 (+)
G114320 adap1,LOC108228240,LOC107388258,LOC102218716 other downstream 1310754 1947841 ~ 1949593 (+)
AMCG00018105 NA other downstream 1335751 1972838 ~ 1973924 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000174_00113659_00119731 PARN coding CI01000174 null 113291 ~ 119859 (-)