AMCG00018063


Basic Information

Item Value
gene id AMCG00018063
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 579900 ~ 590822 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018063
CAAGCTGCCCGTTCAACGCGCTCCTCTCCGGGCTCTGTTTGCTTGTGACGCTGCCGCCGTCCCGGCCCGCCGAGTGAAGCGGAAAGAGCCTTTAAACCGCAAGAGACGCGCTTCCGGCCCGCTTCCCCCGGCTCGGAGCTGGATGAACTGCCGCCGCGCTGGCTGTGTCGGGCGGGAACCGCGTCCGGCTGCGCTGCGTTGAGCGGGTGGGAGAAACTTCGAGACGGTGCCTGGCGGGCGGCCGGGCGGAAGCGCAGGGGTACGTGGCGGAGCGGGGTTGCTGATCCGCGCCGAGTGAAGTCGCCGGCCGCACCGAGGCCCATCCCGCCCCCTGGGGCCGGTACCTGAGAGCTGTGCACACCGAGTCTATAAATGGGAGGCACGGGGTAGACTCGGCATGGTGCGGCGGCTGCGAGTCTCTCTCCGGCTGGTGGTGAAACAGATGGCCCGGAGACCCGACCTGCTGTGCGGAGCCATCGTGCTGGGCTGCAGCCTCCTGCTCGCACTGCGGTTCACCTGCAGTCGAGCGAAGAATGTGGTGGCCCCTGCCCGGCCCCCAGTGCGCTTCTTCTCAGCAAACTCCCCGGTGGTAGACCTGTTCCTGGGGCAGCTGGACCAGGTGGAGCGCCTGCGCGGCGCGGCAGACGTCTCTCTGGTCTTCTACTACGCCCCGTGGTGTGGCCGGTCCATCGCTGTGAGGCCGGAGATCGAGCAGGTGGCCGGGAGGCTGTCCGGGGAGGTGCAGTTTGTGGCGATCAACTGCTGGTGGAACCAGGGAAAGTGCAGGAAGCAGAACAACCTCTATCAGTACCCGGTCATACACCTGTACTACAGGAGGTTCGGCCCCATCGAGTACAAGGGCCCCCTGACCGCCGCCTACGTGGAGCACTTCGTCCGCAGAGTCATCGCCCCGCTGGTGTACCTGCCCTCTCAGGCCCGGCTGCAGGAGTTCCTGTCCCACTACGAGccgGCAGTCGTGGGGTTCTTTGAGTTCAACGCCTCCCCGCAGCCGCCCGGATACATGGAGTTCCTCAGCTCGGCTCTGCAGGCGCTGAAGAGGGACATCCAGGGGGCGCTGCGATTCGGGGTGGTCACCAGTAAGTGGGTGGCCGCATCCATTCCCCTGCGGACGCACGGAGCCGTGTACCTGCACCGCCGGCTCAACGCCTCTCTGGTGTTCCCCCGCGAGCGGCTGAACTTCACGGCGGACGGCGTGTGCCGCTGGGCGCTGGAGCACCGCGAGGTCCTGCTGCGCTGGCTGCGGCCGCACGGGGGCAAGAGCCGGCTGCTGGACAGGGAGCTGGGGAAGGGTGCCGCGCTGCTAGTCTTCGTGCCCTTCGACCCCCTGGCCGAGCATCAGCCGCTGGTAGCGGAGATCGCCATCCAGTACCACAGTTGCCCCGAGGGCCCGGACTGGCAGTCTCCGCAGGGCAGGAGGAGCCCCCCTGCCGAGGACCCCGGCCCCCTGTGCTGCAACACGGTGGTGCTGCCCCGCTGGCACTCCATCTCGCGCAGCCACAACGTGTGTGAGCTGTGCCTGAACCGCTCGGCCGCCCCGCCCTGCAGCTTCCTGGAGATGGAGGCGGCGCTGGACTCCTTCTACCTGCGGGAGCGGCTCGCCGTGCGGCTGCTGTCCCGGAACACGGCCTGCAGCAACATCCTGCGCTCCTACAGCCCCTCCGGCTACTACAGCGCCTGCTGCAAGATCCTGAGCCACGGCCGGGCCCAGACCAGTGGCCCCCCGTCTCGCTCGTACCCTCCAACGCCGTTCCAACCCCCCCCTCGGGACGCTCTGCCTCACTTCGAGGACGGTGGACCCCCTGTGGCTGACCCACTGCAGGCCACCAACGTCACCGGGCTCAGGTGCCGTACGAACAAGACGCTGGGCTTCTACCTGCTGGACTCCCACCTGCACTGGAGCCTCGCCGAGCGGCTGGGGGCGCCCCGCAATGGCACCGCGGCGGCGTTCGCCACCATCGTGGATCTGCGGGACGAGGTCCACTACATCCTGGACCAGAGCCCGCTGATAAAAGCCACACTAGAAGACTTCATAAGAAACTACAGTGTCCCCTACAGCCCGCTGACCCGGCACCTGAGGGGCAGTGCAGTACCGCCCCCCGCCGGCTCGGCCCTCACCGAGGTCACCACGCTCAGCTTCCAGCGCCTCGTCATGGACCAGGACAAGGACGTCCTGCTGCTCTATTACACGCAGTGGTGTGGCTTCTGCTCCGCGCTCAACCACGTGCTCCTCCAGCTGGCCCGGCTCCTGCAGGGACACCACGGCTTCTCCCTCTGCAGGATCAACGCTGCCAGGAATGACCTTCCATGGGAGTTCATGGTGGACCGTGTTCCTGCCCTGCTGCTCTTCCCCAGGAACAGGAAAGCGTGGAGCGTGAAGTTCCCGGAAGACGCCCCCGTCACCCTGCCCAGCCTGCTGCGCTTCCTGCTGCACAACACGGGCCCGGCCGAGGGGGAGAGGGTGACCCGCGCGGCGCTACTGCAGGAGGAGATGGGCCGTCTGCGGGCGGAGCTCCAGATGCTAGAGCACACCCGGGAGCAGCTCTCCCAGCACGCCCTACACAACGAGCCGCAATGGCAGGGCCAGCGCCTGGAGCAGCTCTCCCAGCTCAAGCAGGAGCAGCTCGAGGCCCTTGCCCAGGCTTCCCAGGGGCCCCAGAACACCCTGCAGAGGGATAGGGGCCCGGCCCAGGCCGTGGAGACCGAACCCCCATGGGATGGAGAGTCACCGACATGCAGGGAACAGGCCTCACCCCCGGAGCACGCATCCCCAGAGGACTTGCACAGCAGTCCGGAGCGGGACGGGGGTGCGGGGTCGTGACACAGACTGAGTTACAGAGTGTTGAAGGTGGTTGTATATTAGGGAAGtatttatgattgttttgtgttcCCCCCCTGTGATCGTCGCCCTTAATGAGTGTTTTGTCAAAAATACAAGAATCTATTTTTACATGAATCCTCAGCCATCACTTCAGTATCTTATGGACTTGACTATTCAGgtatgaagaaaaggaaaaatgctGCATTTGTTTACACTTTGAATATTGCACAGATTTGTActaattaaacagtttaatttaactGCGGCTGTGTGTCTGATGGAGGGGGGTGTTGTGCGAGATGCAGGACTGCCTTCACACCGACTCATTCTCAGACCCAGCACTGCTCCAGCGCAGGGAGACCGAGAGGGGCCTTGCCCTTGGACTGAAACCAGCCATCGGTGTCTTACTTTCCACCTGACCCTCCTCGTCCTTGTGAAGTTGAGCGTTTACCATGTCAGTCTAAGGATGGAGAGCGGCGGGGGGGCGACCGCAGTGGCTGCTGGGTTTAGTTCCAGCATAATTAAACTTCTTTCCAGACTCAGGAATGTGCTG

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process

KEGG:

id description
ko04110 Cell cycle
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018063 True 3392 mRNA 0.64 12 579900 590822

Neighbor

gene id symbol gene type direction distance location
AMCG00018055 NA coding downstream 14318 558522 ~ 565582 (-)
AMCG00018056 grifin,LOC107758328,LOC107592780 coding downstream 28660 546786 ~ 551240 (-)
AMCG00018054 NA coding downstream 41906 536678 ~ 537994 (-)
AMCG00018047 NA coding downstream 90854 484037 ~ 489046 (-)
AMCG00018048 NA coding downstream 98580 473096 ~ 481320 (-)
AMCG00018065 NA coding upstream 971 591793 ~ 609889 (-)
AMCG00018067 NA coding upstream 26389 617211 ~ 622245 (-)
AMCG00018064 NA coding upstream 60465 651287 ~ 658508 (-)
AMCG00018066 LOC107682913 coding upstream 71427 662249 ~ 667911 (-)
AMCG00018073 si:dkeyp-72e1.9,LOC107601283 coding upstream 211898 802720 ~ 840922 (-)
G114044 NA non-coding downstream 80382 498327 ~ 499518 (-)
G114030 NA non-coding downstream 107776 468917 ~ 472124 (-)
G114166 ppl non-coding upstream 288489 879311 ~ 889088 (-)
G114179 glyr1,LOC107721499,LOC107688117 non-coding upstream 311498 902320 ~ 903843 (-)
G114183 NA non-coding upstream 322409 913231 ~ 913641 (-)
G114213 NA non-coding upstream 572068 1162890 ~ 1166493 (-)
G114264 NA non-coding upstream 677471 1268293 ~ 1268816 (-)
G114021 gna12,gna12a,LOC107674729,LOC107753491,LOC107703403 other downstream 137476 441085 ~ 442424 (-)
AMCG00018074 NA other upstream 186565 777387 ~ 800471 (-)
AMCG00018077 NA other upstream 331456 922278 ~ 926739 (-)
AMCG00018113 NA other upstream 1394327 1985149 ~ 2006636 (-)
AMCG00018111 abca3,LOC102775623,LOC102307646,LOC107742093 other upstream 1416084 2006906 ~ 2067584 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other upstream 1690878 2281700 ~ 2288862 (-)

Expression


Co-expression Network