AMCG00018065


Basic Information

Item Value
gene id AMCG00018065
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 591793 ~ 609889 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018065
atttaaacattatataaaacttGTGTAAGGCCACCTGAAATATAATCTTTACAAATGTCAGCCAATGGCACTGAATGCAATAACAAATGAGTTTCTGTGGTTTCTTGCGGTGTTGTTGTGGTGCCATCCTGCGGTGCTGCCGGTCACAGCCAGGCGGGGTTGCCAGGCGGGCACAGCGGCTCCAGATGCAGCAGCACCGCCCCACTGGGGTTCACGCGCAGGTAGATGACCCCACTGAGCGTGAAGACGCCGATGGGGCGGGACTCGAAGACGTCAAACACCTTGTATCCCAGGTGACACTCCACGATGTACAGCTTGGCCAGGTTGATGGCGATGGGCAGAGGCATGGGGTCCTGGGCACCGTGCACCACCGCCACCGCGTACCTCCCGGCGGAGAGAGGCCTCTTCCACACCTCGAAGTGATCGTCCTTATAGACCCGGGCACCCTGTACGCCCAGGGGGTCCTGGTTAATCGCGATGGCCAGCTGGTTCTGCAGGATCTCCTTGGCCCGGTCCGAGATGCTCCTCAGGTCGTTGGACATGAAGAGGGGCGCTGCCATTACGACCCACACGGCCATCTGGGTCTTGGACTGCTCGTAGCTCAGCCCAAAGTCACCGACCACGAGCATGTCGGGGTCGTTCCAGCGGCCCGGCCCGGCGGCTGGCTGCAGGACGTCCTGGTGATTCCCGAACCACTCGATAATGCTGTACACGGAGCCCCACGAGTCCTGGATATCGCCGTAGTTCCTCCACAGGTTGCAGATCTGTCCCAGCAGGGCGTAGTCCACCTTTGGGGGGAGTCCTCCCTCGTAGGCCGGCCAGCTGCAGGAGAACATGATGGGCCGGCCGGTGGCATTTAAGGCCGCGCTCATCTTGGGCTATACCTTGTGCTTTAACAGAGGAGTTCGAGTAGCAGCCGTCCAGCTTCAGCATGTCCACCCCCCACTCTGCGAAGGTCTGTGCGTCCAGAGCGACTGTGTCCAGAGTGGTGCCCGGATACCCCCCGCAGGTCAGGGTCCCCATGTCTCCGTAGATCCCCAGCTTCAGGCCCTTCGCATGGACGTAATCCGCCAGGGCCTTGATCCCGCTGGGGAAGTGCTGGGGGTCGGCCGCCAGCCGGCCCTGGGCGTCCCTCTTCTTGGCGGACCAGCAGTCGTCGATGTTGACGTACTGGTAGCCCAGCTCCCTCCAGCCGTCCGCTGCCAGCCGGTCGGCCATGGTCTTGAACAGCCGCTCGCTGATGCAGTTGTCCGGGTCGGTGTCGCAGTCGATGTCGCACCGGTACCGCTCCCAGGCCAGCCAGCCCATGGGCGGTGTGCGGGCCAGCCCGTTGtccagacagagacaggggCCAAGTAGGGCCAGTAGGGCCAGCAGACAAGCGCTCCTCATGATGAACTGCCCTCTGCTAATTGCTAATATTAGATATCGACAACAGACAATTGTTCGGCTCAGGGCAGTGCGCAGACGCACCGAAGCAGCCCCGGTCCCAGCCCGGTCCCAGCCCGGTCCCAGCCCGGTCCCACCCCCTGCGCTCGGGGAGGGAGCAACCAGGAAGCGCTAGGACGTGCAGCCCTGCGGGGACACTGTGGACTGTGGACACTGGACAGCCAACAGGACAAACTAAGCGGCAACAACAACGGAAACTCTCAGCAATGGCCAGTGAGTCTGACCTCGCACAAGTGTCCGCGCTCATCACTGCGGCCCTTGATCAGCTGATCGGGGCCCCGGGGAGCCGCTGCGTTCTGGAACGCAGTCTAATCGTCCCGAGACGAAACCGCGGCTTCGAGCGGCTGCGCATCTCGTCCGACTGCCACCCCTGCGCTGCAAAACGCAGTGTTGACAACATCGAGGACCTAGATTCTCCTGGCAAGATGTCCAGCGATTCTGTAGACCGGAGTGCCCGGTGGCAGGACATCCTGAGAGGCCTGCAGTTCATAcaGTCTACATTGCCCTACCCTGGATCTCAGGAGGAGTATGAGGTGTTCATCCAAGCCCTGGTGAAGAACCTGTTCGGCGAGGGCAACGACGTGTACAAGGAGGGCGACTGGGCCCGGGCGCTGGAGATGTACACCGAGGCGCTGAGCATCGCCGAGTACGCCGACTCGGAGGAGATCAGCGTGTCCAGCGAGACCATCGAGAAGCTGTACGCCAACCGCGCCGCCGCCTACTTGAACATGGGCCTGCACGACCAGGTGCTCCGGGACTGTGAGAAAGCGCTGCAGTGCAATGAGAATAACTACCGGGCTCTGTACCGCAAGTCCAGGTCCCTGAAGGAGCTGGGGAGACACCGGGAGGCCTACGACGCCGTGGCCAAGTGCTCCTTCGCGGTGCCGCAGGACGAGAGCGTCATAAAGCTGACCCAGGAGCTGGCAAAGATGCTGGGATTAAAAATTCGGAAAGCCTACGTCCGAGCCAAGCCTGCTTTGAACCCGTTGCCTGGGGCCACAACTCCAGGGGCCTCGAATGAGAAGTTTTCTAAGGGCCCTGTTTCAGTGGAGGACATTGAATCAGAGCTGTCCGTGGGCGCTCAGGAGAGGGGCTCCTCCTCGGTCCCGGTGTCCGCCGTGGCGCCCTGCTCCTCGGTGAGCGAGACGGCGGAGAGCAAGGCCGCCCCCGTGCTGGCGGTGTCCTCGGTGTCGCCCATTGAGTGTCGGGACACGGGCGGCCTGGCCCCCGCCGCGCTGGTGAACGGGACCAGCGAGTCGTACCCGGTGCCCGAGTCCCAGCTGGACTATGACGGTGACATCATCGGCGATGATCTGGACGAGCTGCTGGACAGAGCCGCCCCTCCGGTGGAGCCCCCGATGGCCATTCCCACCATGAAGGGGCCCATTCCTTTGACGACCGGCGTGGCCGCCAGCCTCTCCCGGCCCAGCCCCCTGCTCGTGCCGGCCATGCCTGTGTCCGGTCAGTTCGTGCCCTCTGTGACCCTGTCCTCGGTGTATCACATCGCCATGAACACGGGGATGTCCACGCTGGAGAAGTTCCCCAACCGAATGGACTCGCTGGACACCCTGTCGATCTCCGAGACCCAGACAGGTAAGATGACCCGGTCGGTCTCCGTGTCTCTGAAGCCTCCGGAGCCGTGTGTCGGGCCGGTGCTGTTTTGTGGGAGTGTTCCGGCGGCGGACGAGAGCTTGGCCGATTCAGGGGGTCTTGTGGAGCTGCAACGAATGTGTGCCGCGTGTAGACCATCTCCTGAGCCTGGCAAAGACAATCTGTTGGCTTCTCAGAGTGGAATGGGTGTCATAGATCATGATGGGGGGTTTCCTAGTGGACCGGACCCGGGTAAAAACCCTCTGGCCGACACCCATGAGTTCAGACAGGCCTGTAACCTGTGCTACGTGAAATCAGATGTTGCCGTGGGAGAAGAGTGCCGCTACCCAGGCCACTGCACGTTCGCCTACTGCCAGGAGGAGATCGACGTCTGGACGCTGGAGCGCAAAGGCGCTATAAGCCGGGAGATGCTGTTCGACCCGCTGTGGGGAAACGGGAAGATGAACCTGACCGTCCCCAAACTGCTGCAGGAGCACGACGGCATATTCATGTTCCTCTGCGAGGTGTGTTTTGACCATAAACCAAGAATTATCAGCAAAAGAAATAAGGACAACCCAGCGCTGTGCTCCCACCCCGTTACGAAGCACGACTTCGAGAAGGACAAGTGCCTGGTGCACATCCTGAGGGGCACCTCTGTCAAGTACACCAAGGTGCGCCCGGTGCACCCGCAGTGCCAGCTGGACCTGTGCCGCCACGAGGTGCGCTACGGCTGCGTGCGCGAGGACGAGTGCTTCTTTGCCCACAGCCTGATCGAGCTCAAGGTGTGGATGATGCAGAACGAAACCGGTATTTCCCATGAGGCCATAACTCAAGAGTCCAAGAAGTACTGGTCCAAGTTTGAAACCAACGTGCCGGGAGTCCAGCAGACCGCCAGCGTCGCCCGGAGGTTTGGACCCCCAAACCTGAAGATGCAGTTTGTGTGCGGACAGTGCTGGAGGAACGGGCAGGTCAGCGAGCCGGACAAGAACCGGAAGTACTGCACCGCCAAGGCCATGCATCCGTGGTCGAAGGAGAAGCGCGTTGTCCTGGTGTCGTCCAGCGAGCGCAAGAAGTGGATCACCATCCGCCCCCTCCCCACCAAGAAGCCCATCCCCTCTCAGTTTGATCTTTGCATCCATATTTCTTCGGGCAAGAAGTGCCAGTACATCGGGATCTGCTCCTTCGCTCACAGCCCAGAGGAGAGAGACATGTGGACGTTCATGAAGGACAACAACATCCATGACATGGAGCAGCTGTATGAGCGCTGGCTGAAGGCCCAGAAGCCGGACTGGAGCGAGGAGGCGGCCAGCAGCACCACCAGGGAGAACGGCAAGCAGATCCACATGCCCACCGACTACGCCGAGGAGGTGGCAGGGAACCACTGCTGGCTCTGTGGGAAGAACTGTAACAGCGACAAGCAGTGGCAGCAGCACATCACCTCCGAGAAGCACAAGGACAAGGTGTTCAACTCGGAGGATGACCAGAACTGCTGGCAGTACCGCTTCCCCACGGGCTGCTTCCGCGTGTGTGAGAGGTTTGTGAAGGGCACCTGCACTGAGGGGGAGAGCTGTAAACTGGCCCACGGGGAAGTGGAGCTGAAGGAGTGGCGGGACCGCAGAGAGTTCCTACTGATGAAGCTGGCCAAGGCCAAGAAGGACAGTCTGATCGCACCAAATGATAACGACTTtggaaaatatagttttttgcTTAAAGACATTAACTAATTGTTCACGATGGGCTGATGCTGAGTGTGTAACACGGAGTGAAAAGGCAAACTAACCGCGGGAGCAGGGGGGGCGGCGGACGCGCAGGATTGTGAGACAAGGACCGCAGGGGAGGTTGTATTGAgcgggttgttttgttttgctttgtctttttctgcATCTTTACTGATCGTAATCGGAGCACAATCCTGGCGTCCCACTGGTGCCGACTCTGACTGAAGCTGACGTGCATTGAGTGATCAGGGCTTTGTTGACGTTGTCTCTGATTAAAACCGACAGACGACGCCTTTACGTAGAATAACGGCTCTCTGGGGCATCAATGGCTGACTCCACAGAAAAGGAAGTCAGGAAGGGGTTACATAAAGCAAACTGAAGAAGATGGGGCCTCAGTGAGGGGCTCCATAACGGCCAACTTAATATGAGCTTTTacttaagtttttttttttttttttcatttaaatggttTCTAAAGGAAATCCAACCTTGATCGGTTCTCGTGTTGATTTGATTCGTGATGTTTGCTCCTGTACGGACTGGAGAAAAATGGAATTTGAAAAATCTGTTTGAGTTTATTTAGCCTGCGATATTTAAGTGTCTGattatttcttccataataaGTATGTAATGTGTGTTGGTACCAGGAGAATGGACCAACAATgccaaaataaaatctacataTATATGAACGCATGAGA

Function

GO: NA

KEGG:

id description
K24945 ZC3H7; zinc finger CCCH domain-containing protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018065 True 5458 mRNA 0.58 29 591793 609889

Neighbor

gene id symbol gene type direction distance location
AMCG00018063 NA coding downstream 971 579900 ~ 590822 (-)
AMCG00018055 NA coding downstream 26211 558522 ~ 565582 (-)
AMCG00018056 grifin,LOC107758328,LOC107592780 coding downstream 40553 546786 ~ 551240 (-)
AMCG00018054 NA coding downstream 53799 536678 ~ 537994 (-)
AMCG00018047 NA coding downstream 102747 484037 ~ 489046 (-)
AMCG00018067 NA coding upstream 7322 617211 ~ 622245 (-)
AMCG00018064 NA coding upstream 41398 651287 ~ 658508 (-)
AMCG00018066 LOC107682913 coding upstream 52360 662249 ~ 667911 (-)
AMCG00018073 si:dkeyp-72e1.9,LOC107601283 coding upstream 192831 802720 ~ 840922 (-)
AMCG00018078 NA coding upstream 280208 890097 ~ 901668 (-)
G114044 NA non-coding downstream 92275 498327 ~ 499518 (-)
G114030 NA non-coding downstream 119669 468917 ~ 472124 (-)
G114166 ppl non-coding upstream 269422 879311 ~ 889088 (-)
G114179 glyr1,LOC107721499,LOC107688117 non-coding upstream 292431 902320 ~ 903843 (-)
G114183 NA non-coding upstream 303342 913231 ~ 913641 (-)
G114213 NA non-coding upstream 553001 1162890 ~ 1166493 (-)
G114264 NA non-coding upstream 658404 1268293 ~ 1268816 (-)
G114021 gna12,gna12a,LOC107674729,LOC107753491,LOC107703403 other downstream 149369 441085 ~ 442424 (-)
AMCG00018074 NA other upstream 167498 777387 ~ 800471 (-)
AMCG00018077 NA other upstream 312389 922278 ~ 926739 (-)
AMCG00018113 NA other upstream 1375260 1985149 ~ 2006636 (-)
AMCG00018111 abca3,LOC102775623,LOC102307646,LOC107742093 other upstream 1397017 2006906 ~ 2067584 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other upstream 1671811 2281700 ~ 2288862 (-)

Expression


Co-expression Network