AMCG00018068 (axin1,LOC107564695)


Basic Information

Item Value
gene id AMCG00018068
gene name axin1,LOC107564695
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 737140 ~ 739283 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018068
atgagtgtgagagagaaggGGTACCCGGTGGACCTGGGGGGCAGCTTTACTGAAGACGCCCCGCGGCCACCTGTTCCCGGGGAGGAGGGCGAGCTGGTGTCCAGTGACGCCAGGCCGTACCACCACAGCTTCTACTCCGCCAAGAGCGACGGGCTGAAGAGCGAGGCGTCCACGGCCACACCGCGGAGACCAGACCTCGACCTGGGCTACGAACCCGAGGGCAGCGCCTCGCCCACGCCCCCCTACCTGAAGTGGGCAGAGTCCCTGCACTCGCTGCTGGACGACCAGGATGGCATCCACCTGTTCCGGACCTTCCTCAAGCAGGAGGACTGTGCCGACCTGCTGGACTTCTGGTTCGCCTGCAGCGGCTTCCGCAAGCTGGAGGCCAGCGAGGGCAACGAGGAGAAGAAGCTCAAGCTGGCCAAGGCCATCTACAAGAAGTACATCCTGGACAACAACGGGATTGTGTCGCGGCAGATCAAGCCAGCCACCAAGAGCTTCATCAAGGACTGCGTGATGAAGCTGCACATTGACCTGGCCATGTTCGACCAGGCCCAGACCGAGATCCAGACCATGATGGAGGAGAACACCTACCCCGTGTTCCTCAAGTCGGACATTTACTTGGAATACACCAGGACAGGCGGGGAGAGCCCCAAGCTATACAGCGACCAGAGCTCGCTCTCGGGCAACGGCAAGGTGCTGCCGGGATACCTGCCCACACTCAACGAGGACGAGGAGTGGAGGTGCGAGCAGGAGCCCGAGGAGCCGGCCGAGAGCGACCCCACGCCCGCCAACCGGCTCACGCAGAAGCTGCTGATGGAGACGGCGCCGCAGAGGGCCGTGACCAACAAGAGGTACCAGGAGAGCCGCGAGTACAGGCACCAGTCCTCCCAGCACAGGGGCCTGCCCCCTGCTCTGCACCCCGGGGTGCGGCCGCCCTGCACCCGGCCCCTCCACCTGCCTGTCGTCTGCACGGACGTGTGCCACTCCTCGGAGGTGTGCTGTGCGTCGCTGTTGGCACATTGTGCACTGGAGCCGGACCGCTTTGTCATTTCTGACACGAATAAAAATCAGTGCCCTGCAGTGTGA

Function

symbol description
axin1 Predicted to enable protein homodimerization activity. Involved in several processes, including negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification; positive regulation of MAPK cascade; and regionalization. Acts upstream of or within several processes, including embryonic morphogenesis; fin regeneration; and regionalization. Part of beta-catenin destruction complex. Is expressed in forebrain; habenula; head; and midbrain. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human AXIN1 (axin 1).

NR:

description
PREDICTED: axin-1 isoform X3

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0090244 Wnt signaling pathway involved in somitogenesis biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0021797 forebrain anterior/posterior pattern specification biological_process
GO:0001743 optic placode formation biological_process
GO:0055001 muscle cell development biological_process
GO:0007257 activation of JUN kinase activity biological_process
GO:0046330 positive regulation of JNK cascade biological_process
GO:0021881 Wnt-activated signaling pathway involved in forebrain neuron fate commitment biological_process
GO:0008219 cell death biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0071407 cellular response to organic cyclic compound biological_process
GO:0045599 negative regulation of fat cell differentiation biological_process
GO:0009950 dorsal/ventral axis specification biological_process
GO:0048320 axial mesoderm formation biological_process
GO:0031101 fin regeneration biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0031122 cytoplasmic microtubule organization biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0060272 embryonic skeletal joint morphogenesis biological_process
GO:0060823 canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation biological_process
GO:0030910 olfactory placode formation biological_process
GO:0005881 cytoplasmic microtubule cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005938 cell cortex cellular_component
GO:0030877 beta-catenin destruction complex cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0070016 armadillo repeat domain binding molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0019901 protein kinase binding molecular_function
GO:0008013 beta-catenin binding molecular_function

KEGG:

id description
K02157 AXIN1; axin 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018068 True 1089 mRNA 0.64 2 737140 739283

Neighbor

gene id symbol gene type direction distance location
AMCG00018058 NA coding upstream 65304 667954 ~ 671836 (+)
AMCG00018059 NA coding upstream 75024 657682 ~ 662116 (+)
AMCG00018062 NA coding upstream 100053 622978 ~ 637087 (+)
AMCG00018061 LOC106607234 coding upstream 121345 612489 ~ 615795 (+)
AMCG00018060 NA coding upstream 127223 604330 ~ 609917 (+)
AMCG00018070 NA coding downstream 7392 746675 ~ 759719 (+)
AMCG00018071 NA coding downstream 21140 760423 ~ 760701 (+)
AMCG00018069 NA coding downstream 24271 763554 ~ 777290 (+)
AMCG00018075 glyr1,LOC107688117,LOC107590383,LOC107721499 coding downstream 162901 902184 ~ 912776 (+)
AMCG00018076 rogdi,LOC105899978,LOC107719995,LOC105899878 coding downstream 179807 919090 ~ 921114 (+)
G114056 NA non-coding upstream 183636 553210 ~ 553504 (+)
G114018 NA non-coding upstream 265016 468788 ~ 472124 (+)
G114205 NA non-coding downstream 423609 1162892 ~ 1178095 (+)
G114237 NA non-coding downstream 527557 1266840 ~ 1268893 (+)
G114253 NA non-coding downstream 551272 1290555 ~ 1291851 (+)
G114274 NA non-coding downstream 794192 1533475 ~ 1534982 (+)
G114299 NA non-coding downstream 1125274 1864557 ~ 1865570 (+)
G114053 snn,LOC107703342,LOC107564698 other upstream 157436 575260 ~ 579704 (+)
G114123 NA other downstream 38100 777383 ~ 794790 (+)
AMCG00018072 LOC107720077 other downstream 132038 871321 ~ 889033 (+)
G114219 NA other downstream 480496 1219779 ~ 1220216 (+)
G114320 adap1,LOC108228240,LOC107388258,LOC102218716 other downstream 1208558 1947841 ~ 1949593 (+)
AMCG00018105 NA other downstream 1233555 1972838 ~ 1973924 (+)

Expression


Co-expression Network